Locus 1564

Sequence ID X_DroMel_CAF1
Location 4,472,536 – 4,472,640
Length 104
Max. P 0.994583
window2573

overview

Window 3

Location 4,472,536 – 4,472,640
Length 104
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 74.42
Mean single sequence MFE -28.78
Consensus MFE -22.42
Energy contribution -21.43
Covariance contribution -0.99
Combinations/Pair 1.24
Mean z-score -1.85
Structure conservation index 0.78
SVM decision value 2.49
SVM RNA-class probability 0.994583
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4472536 104 + 22224390
CGGAACUUUUAAAUUUGGCGGAAAACGGUGUGCCCAGAUGUAAAGAU----------------CGAAAACAUAGGCAUUUGGCCACACUGCGAUAUAGAUUUAAAUCGAUCGUCGACCCG
(((....((((((((((.((.....(((((((.((((((((......----------------...........)))))))).)))))))))...))))))))))(((.....))).))) ( -28.73)
>DroSec_CAF1 74136 104 + 1
CGGAACUUUUAAGUUUGGCGGGAAAUGGUGUGCCCAGAUGUAAAGAA----------------CGAUAACAUAGACAUUUGGCCACACUGCGAUAUAGAUUUAAAUCGAUCGUAAACCCG
(.(((((....))))).)((((....((((((.((((((((......----------------...........)))))))).))))))(((((...(((....))).)))))...)))) ( -31.53)
>DroYak_CAF1 75102 118 + 1
CGUAACUUUUAAAUUUGGCAGAAAAUAGUGUGCCCAACUGUAAGGAAUGCAUUGAGACGCCCUCUAAAAUAUGUGCAUUUGGUCACACUGCGAUACAGAUUUAAAUAGGUUUUAAAUU--
...((((((((((((((........(((((((.((((.((((...........(((.....))).........)))).)))).))))))).....))))))))))..)))).......-- ( -26.07)
>consensus
CGGAACUUUUAAAUUUGGCGGAAAAUGGUGUGCCCAGAUGUAAAGAA________________CGAAAACAUAGGCAUUUGGCCACACUGCGAUAUAGAUUUAAAUCGAUCGUAAACCCG
.......((((((((((........(((((((.((((((((.................................)))))))).))))))).....))))))))))............... (-22.42 = -21.43 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:39 2006