| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,469,394 – 4,469,514 |
| Length | 120 |
| Max. P | 0.593518 |
| Location | 4,469,394 – 4,469,514 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.56 |
| Mean single sequence MFE | -37.00 |
| Consensus MFE | -30.71 |
| Energy contribution | -30.27 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4469394 120 + 22224390 GCACAAAAAAUGGCCGAAACCAUUUUGGAGCAGGCCAUCAAGGCGGGCAAGCCAUUGAGUCCACCACCCACCAAGGAGAAUGCCUCGCCCGCCAAUCCAACUGUGGCCACAACAAUGCAA (((.......(((((....((.....)).((((........(((((((.((.((((...(((............))).)))).)).))))))).......)))))))))......))).. ( -37.88) >DroSec_CAF1 71036 120 + 1 GCGCAAAAAAUGGCCGAAACCAUUUUGGAGCAGGCCAUCAAGGCGGGCAAGCCGUCGAGUCCACCACCCACCAAGGAGAAUGCCCCGCCCGCCAAUCCAACCGUGGCCACAACCAUGCAG ((((..(((((((......)))))))...)).((((((...(((((((..((..((...(((............)))))..))...))))))).........))))))........)).. ( -37.20) >DroYak_CAF1 71897 120 + 1 GCACAAAAAAUGGCCGAAACCAUUCUGGAGCAGGCCAUCAAGGCGGGCAAGCCAUCGACUCCACCGCCCGCCAAGGAAAAUGCACCGCCAGCCAAUCCCAUCGUGGCCACCACCAUGCAG (((.....(((((......))))).(((.(..((((((...(((((((.................)))))))..(((....((.......))...)))....))))))..).)))))).. ( -35.93) >consensus GCACAAAAAAUGGCCGAAACCAUUUUGGAGCAGGCCAUCAAGGCGGGCAAGCCAUCGAGUCCACCACCCACCAAGGAGAAUGCCCCGCCCGCCAAUCCAACCGUGGCCACAACCAUGCAG (((......((((((....((.....))....))))))...((((((((..((.....................))....))).))))).((((.........))))........))).. (-30.71 = -30.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:36 2006