Locus 1554

Sequence ID X_DroMel_CAF1
Location 4,463,796 – 4,463,912
Length 116
Max. P 0.910058
window2552

overview

Window 2

Location 4,463,796 – 4,463,912
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.57
Mean single sequence MFE -27.90
Consensus MFE -22.51
Energy contribution -22.14
Covariance contribution -0.37
Combinations/Pair 1.11
Mean z-score -2.21
Structure conservation index 0.81
SVM decision value 1.07
SVM RNA-class probability 0.910058
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4463796 116 + 22224390
A-AGUCCAUUCCCAAA--A-CCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCGAUGCUAAAACCCUUGAACUUUGACACACCACG
.-.(((....((((((--(-(.((......)).))))))))..((((((((....)).(((((..(((((............)))))...))))).......)))))).)))........ ( -30.30)
>DroSec_CAF1 65373 112 + 1
A-AGUCCUUUCCCGAA--A-CCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCGAUGCUAAAACCCUUGAACUUUGACACAC----
.-.(((....((((((--(-(.((......)).))))))))..((((((((....)).(((((..(((((............)))))...))))).......)))))).)))....---- ( -30.00)
>DroEre_CAF1 69060 114 + 1
AAAGUCCUUUUCCGAA--AUCCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCAAUGCUAAAACCCUUGAACUUUGACACAC----
...........(((((--(..((.......))..))))))(((((((((((....)).(((((..(((((............)))))...))))).......)))).)))))....---- ( -27.60)
>DroYak_CAF1 66182 116 + 1
AAAGUCCUUUUCCAAAAAACCCCUUUCCUUGUUGUUUUGGGUCAAGUUCUGAAUGCCAUUAGCCGGGUCAAAAAAUUACCCAUGGCCAAUGCUAAGACCCUUGAACUUUGACACAC----
...........(((((((((..........))).))))))(((((((((.........(((((..(((((............)))))...))))).......)))).)))))....---- ( -23.69)
>consensus
A_AGUCCUUUCCCAAA__A_CCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCAAUGCUAAAACCCUUGAACUUUGACACAC____
...........(((((....(.((......)).).)))))(((((((((.........(((((..(((((............)))))...))))).......)))).)))))........ (-22.51 = -22.14 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:20 2006