| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,460,974 – 4,461,090 |
| Length | 116 |
| Max. P | 0.865644 |
| Location | 4,460,974 – 4,461,090 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.58 |
| Mean single sequence MFE | -37.33 |
| Consensus MFE | -31.55 |
| Energy contribution | -31.00 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4460974 116 - 22224390 UCG--GAAUUCAGUGUCGAAAAGAAUGCAAAUUUCCAUCGAAAGCGAU--UGGAAAACUUAGUCGCUUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCGUGGGUGGCACAAUAAA (((--(((..(((((((((...((((....))))...))))(((((((--(((.....))))))))))....)))))...))))))((((((..(.(((....))).)..)).))))... ( -34.90) >DroSec_CAF1 62468 116 - 1 CAU--GAAUUCAGUGCCGAAAAGCAUGCAAAUUGCCAUCGAAAGCGAU--UGGAAAACUUCGCCGCUUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCGUGGGUGGCACAGUAAA ...--.......((((((.....(((((......((((((....))).--)))...........((.(((((.((((.(((...))).)))).))))).)))))))..))))))...... ( -34.30) >DroEre_CAF1 65994 119 - 1 UCGCAGAAUUUGGUGCCA-GAACCGAGCAAAUUUUCAUCGAAACCGAUUUGAAAAAAUAUCGCUGCGUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCUUGGGUGGCACAAUAAA ............((((((-...((((((...(((((((((....)))..)))))).........((((((((.((((.(((...))).)))).)))))))))))))).))))))...... ( -42.80) >consensus UCG__GAAUUCAGUGCCGAAAAGCAUGCAAAUUUCCAUCGAAAGCGAU__UGGAAAACUUCGCCGCUUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCGUGGGUGGCACAAUAAA ............((((((.....(((((...(((((((((....))))...)))))........((.(((((.((((.(((...))).)))).))))).)))))))..))))))...... (-31.55 = -31.00 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006