Locus 1550

Sequence ID X_DroMel_CAF1
Location 4,460,533 – 4,460,650
Length 117
Max. P 0.905813
window2540

overview

Window 0

Location 4,460,533 – 4,460,650
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -33.87
Consensus MFE -29.90
Energy contribution -30.57
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.88
SVM decision value 1.04
SVM RNA-class probability 0.905813
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4460533 117 + 22224390
U-UUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGGCAGCAUUGUUUGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCU--
(-(((((....))))))((((((((((((((....(((..((......))..)))....))))))))).....(((.(((((((.....))))))).))).........)))))....-- ( -30.00)
>DroEre_CAF1 65549 120 + 1
UUUUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGCCAGCAUUGUUAGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCUUC
............((((.((((((..(((.((((..(((((((((((((((((((.((((((((......)))).))))))))))..))))))))))))))))).))).))))))..)))) ( -38.10)
>DroYak_CAF1 62820 120 + 1
UUUUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGGCAGCAUUGUUAGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCUUC
............((((.((((((..(((.((((..(((((.(((((((((((((.((((((((......)))).))))))))))..))))))).))))))))).))).))))))..)))) ( -33.50)
>consensus
UUUUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGGCAGCAUUGUUAGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCUUC
.((((((....))))))((((((..(((.((((..(((((.(((((((((((((.((((((((......)))).))))))))))..))))))).))))))))).))).))))))...... (-29.90 = -30.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006