Locus 155

Sequence ID X_DroMel_CAF1
Location 553,381 – 553,472
Length 91
Max. P 0.999065
window247 window248

overview

Window 7

Location 553,381 – 553,472
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 83.58
Mean single sequence MFE -14.20
Consensus MFE -15.22
Energy contribution -14.67
Covariance contribution -0.55
Combinations/Pair 1.12
Mean z-score -1.06
Structure conservation index 1.07
SVM decision value 3.35
SVM RNA-class probability 0.999065
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 553381 91 + 22224390
UUAAAAUUAGAAAUUGCUUAUUAAGUAAUACUUUAAUACAAUGACCUAAUUGACAAUGCAAUGAAAUUCUUUGCAACAUAGAUAAGAAGGG
....((((((..((((..(((((((......)))))))))))...)))))).....(((((.(.....).)))))................ ( -11.20)
>DroSec_CAF1 18031 82 + 1
UUGAAAUUAGAAAUCGCUCAUUAAGU-----CUUAAUGUAGUGACCUAAUUGACAGUGCAAUGAAAUUCUUUGCAAAAUUGAAAAAA----
(((.((((((...((((((((((...-----..))))).))))).))))))..)))(((((.(.....).)))))............---- ( -15.40)
>DroSim_CAF1 16493 86 + 1
UUGAAAUUAGAAAUCGCUCAUUAAGU-----CUUAAUGUAGUGACCUAAUUGACAGUGCAAUGAAAUUCUUUGCAAAAUUCAUAAGAAGGG
.............((((((((((...-----..))))).)))))(((...(((...(((((.(.....).)))))....))).....))). ( -16.00)
>consensus
UUGAAAUUAGAAAUCGCUCAUUAAGU_____CUUAAUGUAGUGACCUAAUUGACAGUGCAAUGAAAUUCUUUGCAAAAUUGAUAAGAAGGG
....((((((...((((((((((((......))))))).))))).)))))).....(((((.(.....).)))))................ (-15.22 = -14.67 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 553,381 – 553,472
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 83.58
Mean single sequence MFE -12.73
Consensus MFE -11.46
Energy contribution -11.47
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.06
Structure conservation index 0.90
SVM decision value 0.20
SVM RNA-class probability 0.632397
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 553381 91 - 22224390
CCCUUCUUAUCUAUGUUGCAAAGAAUUUCAUUGCAUUGUCAAUUAGGUCAUUGUAUUAAAGUAUUACUUAAUAAGCAAUUUCUAAUUUUAA
................(((((.(.....).)))))((((..(((((((....((((....)))).)))))))..))))............. ( -11.10)
>DroSec_CAF1 18031 82 - 1
----UUUUUUCAAUUUUGCAAAGAAUUUCAUUGCACUGUCAAUUAGGUCACUACAUUAAG-----ACUUAAUGAGCGAUUUCUAAUUUCAA
----............(((((.(.....).))))).(((..((((((((..........)-----)))))))..))).............. ( -12.70)
>DroSim_CAF1 16493 86 - 1
CCCUUCUUAUGAAUUUUGCAAAGAAUUUCAUUGCACUGUCAAUUAGGUCACUACAUUAAG-----ACUUAAUGAGCGAUUUCUAAUUUCAA
.........((((...(((((.(.....).))))).(((..((((((((..........)-----)))))))..))).........)))). ( -14.40)
>consensus
CCCUUCUUAUCAAUUUUGCAAAGAAUUUCAUUGCACUGUCAAUUAGGUCACUACAUUAAG_____ACUUAAUGAGCGAUUUCUAAUUUCAA
................(((((.(.....).))))).....(((((((((.((.(((((((......))))))))).)))..)))))).... (-11.46 = -11.47 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:26 2006