Locus 1548

Sequence ID X_DroMel_CAF1
Location 4,459,277 – 4,459,374
Length 97
Max. P 0.881875
window2535

overview

Window 5

Location 4,459,277 – 4,459,374
Length 97
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 84.28
Mean single sequence MFE -23.77
Consensus MFE -17.97
Energy contribution -19.87
Covariance contribution 1.89
Combinations/Pair 1.07
Mean z-score -2.39
Structure conservation index 0.76
SVM decision value 0.92
SVM RNA-class probability 0.881875
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4459277 97 + 22224390
GUUUUGUACUUAAACGACUGAUAUGCAGCACCAUAUCAGCGUGACGUUUUGAGUUCUUAAAAAAUGAUAAUUCAACAAUGAUUUGAUACGAAAUUUC---------
((((((((.(((((((.((((((((......)))))))))))..(((((((((((.(((.....))).))))))).))))..))))))))))))...--------- ( -23.60)
>DroSec_CAF1 60851 101 + 1
AUUUCGUACUGAAACGACUGAUAUGCAGCUCCAUAUCAGCGUGAUGU-----GUUCUUAAAACAUGAUAUUUCAACAAUCAUUUGUGACGAAAUUUCAUUUUGUUA
(((((((..(((((((.((((((((......)))))))))))...((-----(((.....))))).....))))((((....)))).)))))))............ ( -22.20)
>DroSim_CAF1 66058 106 + 1
GUUUCGUACUGAAACGACUGAUAUGCAGCUCCAUAUCAGCGUGAUGUUUUGAGUUCUUAAAACAUGAUAUUUAAACAAUCAUUUGUGACGAAAUUUCAUUUUGUUA
(((((.....)))))(.((((((((......)))))))))((.(((((((((....))))))))).))......((((....))))((((((((...)))))))). ( -25.50)
>consensus
GUUUCGUACUGAAACGACUGAUAUGCAGCUCCAUAUCAGCGUGAUGUUUUGAGUUCUUAAAACAUGAUAUUUCAACAAUCAUUUGUGACGAAAUUUCAUUUUGUUA
(((((((......(((.((((((((......))))))))))).(((((((((....)))))))))......................)))))))............ (-17.97 = -19.87 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:05 2006