| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,453,715 – 4,453,835 |
| Length | 120 |
| Max. P | 0.565764 |
| Location | 4,453,715 – 4,453,835 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.69 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -20.08 |
| Energy contribution | -20.64 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4453715 120 - 22224390 UUUUUUUUUUUCAUUUGGUUUCGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC ....(((((((((((....(((...((..(((((((((((((........))))..))))...)))))..))......((((....)))).)))....)))))))))))........... ( -32.40) >DroSec_CAF1 55139 104 - 1 -UUUUUUUUUUCAUUUGG---------------UGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC -...(((((((((((.((---------------(((((((((........))))..)))))))...(((((((.....((((....)))).))))))))))))))))))........... ( -28.40) >DroSim_CAF1 56480 104 - 1 -UUUUUUUUUUCAUUUGG---------------UGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC -...(((((((((((.((---------------(((((((((........))))..)))))))...(((((((.....((((....)))).))))))))))))))))))........... ( -28.40) >DroEre_CAF1 57090 114 - 1 -UUUUGUUUUUGGU-----UACGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC -.......((..((-----((....((..(((((((((((((........))))..))))...)))))..)).))))..)).................(((((......)))))...... ( -28.10) >DroYak_CAF1 55796 114 - 1 -UUUUGUUUUUGGU-----UUCGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCCGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAU -...((...((..(-----(((((((((((((((((((((((........))))..)))))).((....))....................))))))))))))))..)).))........ ( -29.90) >consensus _UUUUUUUUUUCAUUUGG_U_CGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC ....((((((((((...................(((((((((........))))..))))).....(((((((.....((((....)))).))))))).))))))))))........... (-20.08 = -20.64 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:00 2006