Locus 1532

Sequence ID X_DroMel_CAF1
Location 4,442,356 – 4,442,476
Length 120
Max. P 0.814738
window2499

overview

Window 9

Location 4,442,356 – 4,442,476
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -33.82
Consensus MFE -32.50
Energy contribution -32.54
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.34
Structure conservation index 0.96
SVM decision value 0.66
SVM RNA-class probability 0.814738
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4442356 120 + 22224390
GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU
((((((((((((....)))).....(((((((..((((((((...(((..((.((((........)))).....)).....))).))))))..))..))))))).....))))))))... ( -33.40)
>DroSec_CAF1 44014 120 + 1
GCUUUGAUGGCUGCCCAGCUUAUCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUAGGAAUCCAUCGGAGCAAU
((((((((((...(((((.......)))((((..((((((((...(((..((.((((........)))).....)).....))).))))))..))..)))).))...))))))))))... ( -32.60)
>DroSim_CAF1 45207 120 + 1
GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU
((((((((((((....)))).....(((((((..((((((((...(((..((.((((........)))).....)).....))).))))))..))..))))))).....))))))))... ( -33.40)
>DroEre_CAF1 45904 120 + 1
GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUGGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU
((((((((((((....)))).....(((((((..((((((((...(((..((.(((((......))))).....)).....))).))))))..))..))))))).....))))))))... ( -34.50)
>DroYak_CAF1 44717 120 + 1
GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGACUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU
((((((((((((....)))).....(((((((..((((((((((..((..((.((((........)))).....))..))..))).)))))..))..))))))).....))))))))... ( -35.20)
>consensus
GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU
((((((((((((....)))).....(((((((..((((((((((..((..((.((((........)))).....))..))..))).)))))..))..))))))).....))))))))... (-32.50 = -32.54 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:31 2006