Locus 1525

Sequence ID X_DroMel_CAF1
Location 4,439,850 – 4,439,969
Length 119
Max. P 0.995371
window2476

overview

Window 6

Location 4,439,850 – 4,439,969
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.25
Mean single sequence MFE -33.24
Consensus MFE -31.58
Energy contribution -31.62
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 0.95
SVM decision value 2.57
SVM RNA-class probability 0.995371
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4439850 119 + 22224390
GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUUAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCGUCUUCAUAUUUGGUUUUCCAAUA-CAAUCAUCAU
(((((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))))........((((....))))..-.......... ( -33.10)
>DroSec_CAF1 41639 111 + 1
GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA-UA--------
..(((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))..-..-------- ( -32.30)
>DroSim_CAF1 43090 111 + 1
GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA-UA--------
..(((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))..-..-------- ( -32.30)
>DroEre_CAF1 43399 119 + 1
GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA-CAAGCAUCAU
(((((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))..-...))..... ( -34.70)
>DroYak_CAF1 42380 120 + 1
GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCAUCAUAUUUGGUUUUCCAUCAUCAAGCAUCAU
(((((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))...........(((....))).......))..... ( -33.80)
>consensus
GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA_CAA_CAUCAU
..(((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))............. (-31.58 = -31.62 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:11 2006