Locus 1524

Sequence ID X_DroMel_CAF1
Location 4,438,543 – 4,438,663
Length 120
Max. P 0.750920
window2475

overview

Window 5

Location 4,438,543 – 4,438,663
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.15
Mean single sequence MFE -25.10
Consensus MFE -21.78
Energy contribution -22.02
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.87
SVM decision value 0.48
SVM RNA-class probability 0.750920
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4438543 120 - 22224390
CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUAAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGCCUGG
....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))........................(((.((.....))))) ( -25.00)
>DroSec_CAF1 40352 119 - 1
CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGUC-GG
....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))............(((.....((......)).....))-). ( -26.20)
>DroSim_CAF1 41784 119 - 1
CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGUC-GG
....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))............(((.....((......)).....))-). ( -26.20)
>DroEre_CAF1 42019 119 - 1
CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAGGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGCC-GG
...((((((.((((.(((((((...........)))).)))............((((((....))))))..))))))))))...................((......)).......-.. ( -26.80)
>DroYak_CAF1 41057 119 - 1
CAACGUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUGCUUCUUGAUGGAAAUUAGGCAGCCAGUAAAAGAAAAUGAAAACGAAAACACCAUCUAAGGAAAAGCC-GG
..........((((.(((((((...........)))).))).(((....(((.((((((....)))))).)))((...........))...)))......((......))....)))-). ( -21.30)
>consensus
CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGCC_GG
....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))....................((......)).......... (-21.78 = -22.02 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:10 2006