Locus 1509

Sequence ID X_DroMel_CAF1
Location 4,430,386 – 4,430,503
Length 117
Max. P 0.704151
window2439

overview

Window 9

Location 4,430,386 – 4,430,503
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -28.32
Consensus MFE -25.62
Energy contribution -25.74
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.26
Structure conservation index 0.90
SVM decision value 0.36
SVM RNA-class probability 0.704151
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4430386 117 - 22224390
UGCAAAUGCUUU-UUUCAUAUUCCUGUAUUUUUUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGU--UUGCCAGGCCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUCU
.((....))...-..((((((((((((((((.......(((((((((..((((...))))((((((.((......))--))).))))))))))))...))))))).)))))).))).... ( -28.90)
>DroSec_CAF1 32731 116 - 1
UGCAAAUGCUUU-UUUCAUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAGCACUCCUCUGU--UUGCCAGAACAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU
.((....))...-..((((((((((((((((-....(((.(((..(((.....)))..))).)))....((((((((--((....))))))).)))..))))))).)))))).))).... ( -28.90)
>DroSim_CAF1 34058 116 - 1
UGCAAAUGCUUU-UUUCAUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAGCACUCCUCUGU--UUGCCAGACCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU
.((....))...-..((((((((((((((((-(((((.(.(((((((((((((...))))..((((.......))))--))))))))).).)))))..))))))).)))))).))).... ( -29.20)
>DroEre_CAF1 33839 117 - 1
UGCAAAUGCUUUUUUUCAUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGU--UUGCAAGACCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU
.((....))......((((((((((((((((-......(((((((((..((((...)))).(((((.((......))--)))))..)))))))))...))))))).)))))).))).... ( -29.50)
>DroYak_CAF1 33090 118 - 1
UGCAAAUGCUUU-UUUCUUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGUUUUUGCAAGAUCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU
.((....))...-.........((...((.(-((((((.((((((((......(((((((((((((.((......))..)))).)).))))))).))))))))))))))).)).)).... ( -25.10)
>consensus
UGCAAAUGCUUU_UUUCAUAUUCCUGUAUUU_UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGU__UUGCCAGACCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU
.((....))........((((((((((((((.......(((((((((..((((...))))(((((..((......))...))).)))))))))))...))))))).)))))))....... (-25.62 = -25.74 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:37 2006