| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,429,659 – 4,429,777 |
| Length | 118 |
| Max. P | 0.927412 |
| Location | 4,429,659 – 4,429,777 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.45 |
| Mean single sequence MFE | -39.66 |
| Consensus MFE | -33.86 |
| Energy contribution | -35.50 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.927412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4429659 118 + 22224390 --UACUUCUGCUGGCACUGCUCCUGCUGUUCUGGCCCAACUGUCAGGAUGCAAAGCGUGUGUCUCGGCCGUUCAAGGGAACCAAACACCGCAACACGGCCAACAACAGAAAACGAAAGGG --...(((((..(((((((((..(((.((((((((......))))))))))).)))).)))))..((((((....((..........)).....)))))).....)))))..(....).. ( -41.30) >DroSec_CAF1 32028 118 + 1 --UACUUCUGCUGGCACUGCUCCUGCUGUUCUGGCCCAACUGUCAGGAUGCAAAGCGUGUGUCUCGGCCGUUCAAGGGAACCAAACACCGCAACACGGCCAACAACAGAAAACGAAAGGG --...(((((..(((((((((..(((.((((((((......))))))))))).)))).)))))..((((((....((..........)).....)))))).....)))))..(....).. ( -41.30) >DroSim_CAF1 33348 118 + 1 --UACUUCUGCUGGCACUGCUCCUGCUGUUCUGGCCCAACUGUCAGGAUGCAAAGCGUGUGUCUCGGCCGUUCAAGGGAACCAAACACCGCAACACGGCCAACAGCAGAAAACGAAAGGG --...((((((((((((((((..(((.((((((((......))))))))))).)))).))))...((((((....((..........)).....))))))..))))))))..(....).. ( -47.10) >DroEre_CAF1 33063 120 + 1 CAUACGUCCACUGGCUCUUCUCCUGCUGUCCUGGCCCAACUGUCAGGAUGCAAAGCGUGUGUCUCGGCCGUUCAAGGGAACCAAACACCGCAAUACGGCGAACAACAGAAAACGAAAGGG ....(((...(((....(((.(((((.((((((((......)))))))))))..(((.((((...((((......))...))..))))))).....)).)))...)))...)))...... ( -34.00) >DroYak_CAF1 32411 118 + 1 --UACUUCUGCUGGCACUUCUCCUGCUUUUCUGGCCCAACUGUCAGGAUGCAAAGCGUGUGUCUCGGCCGUUCAAGGGAACCAAACACCGCAACUCGGCCAACAACAGAAAACGAAAGGG --...(((((..(((((..((..(((..(((((((......))))))).))).))...)))))..(((((.....((..........))......))))).....)))))..(....).. ( -34.60) >consensus __UACUUCUGCUGGCACUGCUCCUGCUGUUCUGGCCCAACUGUCAGGAUGCAAAGCGUGUGUCUCGGCCGUUCAAGGGAACCAAACACCGCAACACGGCCAACAACAGAAAACGAAAGGG .....(((((..(((((((((..(((.((((((((......))))))))))).)))).)))))..((((((....((..........)).....)))))).....)))))..(....).. (-33.86 = -35.50 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:34 2006