Locus 1506

Sequence ID X_DroMel_CAF1
Location 4,429,462 – 4,429,566
Length 104
Max. P 0.948485
window2435

overview

Window 5

Location 4,429,462 – 4,429,566
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -23.68
Consensus MFE -14.58
Energy contribution -14.78
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.62
SVM decision value 1.38
SVM RNA-class probability 0.948485
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4429462 104 - 22224390
-----------AUUCAAAACAAC---UUUUAUUAAUGGUAACAUUACAU-UUUUCUCUUGGUGCAUAGCAGCAGCAACCCCUG-CAGUUGCACAAAGGUGCAUCCUUGCUUCAUCAUACC
-----------............---......(((((....)))))...-........(((((...((((((((......)))-)...(((((....)))))....)))).))))).... ( -21.30)
>DroSec_CAF1 31818 115 - 1
AUUAAGAACGUAUUCAAAACAUC---UUUUGCUAAUAGUAACAUUAGAU-UUUUCUUUGAGUGCCAAGCAGCAGCAACCCCUG-CAGUUGCACAAAGGUGCAUCCUUGCAUCAUCAUACC
.........(((((((((..(((---(.((((.....))))....))))-.....)))))))))...(((((.(((.....))-).))))).....((((((....))))))........ ( -27.60)
>DroSim_CAF1 33138 116 - 1
AUUAAGAACGUAUUCAAAACAUC---UUUUAUUAAUGGUAACAUAACCUUUUUUCUUUCGGUGCCAAGCAGCAGCAACCCCUG-CAGUUGCACAAAGGUGCAUCCUUGCAUCAUCAUACC
...(((((.((.......))...---..........(((......)))....)))))..((((....(((((.(((.....))-).))))).....((((((....))))))....)))) ( -22.50)
>DroEre_CAF1 32833 112 - 1
AUUUAGAACAUAUUCAUAAUUUUAUUUUCC----AAGGCACCAUUACAU-UUUUAUUUUGCUGCCAAGCAGCAGCAACCCCUUUGAGUUGCACAAAGGUGCAUCCUUGCAUCA---UCCU
.............................(----((((((((.......-........((((((...))))))(((((........))))).....)))))...)))).....---.... ( -24.70)
>DroYak_CAF1 32188 115 - 1
AUUUAGAACGUAUUCAGAACAUUAUUUUUUAUUAAAGAAAACUUUACAU-UUUUCUUUUGGUGCCAAGCAGCAGCAACCCCUG-CAGUUGCACAUAGGUGCAUCCUUGCAUCA---UUCC
.................................((((((((........-))))))))..((((..(((.((((......)))-).)))))))...((((((....)))))).---.... ( -22.30)
>consensus
AUUAAGAACGUAUUCAAAACAUC___UUUUAUUAAUGGUAACAUUACAU_UUUUCUUUUGGUGCCAAGCAGCAGCAACCCCUG_CAGUUGCACAAAGGUGCAUCCUUGCAUCAUCAUACC
.............................................................(((......)))(((((........))))).....((((((....))))))........ (-14.58 = -14.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:33 2006