Locus 1505

Sequence ID X_DroMel_CAF1
Location 4,429,264 – 4,429,382
Length 118
Max. P 0.985585
window2434

overview

Window 4

Location 4,429,264 – 4,429,382
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -44.88
Consensus MFE -38.76
Energy contribution -40.00
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -1.95
Structure conservation index 0.86
SVM decision value 2.01
SVM RNA-class probability 0.985585
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4429264 118 - 22224390
CGCUCUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGCACCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUAGCUA
.(((((((((((((.(((.....)))..((((((.(((((.........))))))))))))))))..((((.......))))..........))))))(((....)))......)).. ( -44.00)
>DroSec_CAF1 31623 118 - 1
CGCUCUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGGCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUGGCUA
.((....))....(((((((((((((((((((((.((((((.......))))))))))))..((...((((((...))))))..))....)))))...(((....))))))))))))) ( -51.20)
>DroSim_CAF1 32943 118 - 1
CGCUAUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUGGCUA
.((....))....(((((((((((((((((((((.(((((.........)))))))))))..((...((((((...))))))..))....)))))...(((....))))))))))))) ( -50.30)
>DroEre_CAF1 32638 118 - 1
CGCUCUGGCAGCCUGGCCAAAAAGGAGAGAUCCCGAGUCGCCGGAUCAUUGACUGGUAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAUAGUCUUCGUUGCUA
.((((((((..(((........)))...((((((((...(((((........))))).)))))....((((((...)))))).......)))))))))(((((......))))))).. ( -39.40)
>DroYak_CAF1 31993 118 - 1
CGCUCUGGCAGCCUGGCUAAAAAGGACAGAUCCCGAGCCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUUUUUGCUA
.(((((((((((((((((.....(((....)))..)))).((((........))))....)))))..((((((...))))))..........))))))(((....)))......)).. ( -39.50)
>consensus
CGCUCUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUGGCUA
.(((((((((((((.(((.....)))..((((((.(((((.........))))))))))))))))..((((((...))))))..........))))))(((....)))......)).. (-38.76 = -40.00 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:32 2006