Locus 1504

Sequence ID X_DroMel_CAF1
Location 4,429,071 – 4,429,191
Length 120
Max. P 0.791995
window2433

overview

Window 3

Location 4,429,071 – 4,429,191
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -36.86
Consensus MFE -32.02
Energy contribution -32.62
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.87
SVM decision value 0.59
SVM RNA-class probability 0.791995
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4429071 120 + 22224390
CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUCAAAGAGGGAGAACGGAUCGUAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC
.(((..((((.((((.....))))....))))))).....(((((((.......((((((..(((...))).))))))(((((((..........)))))))......)))))))..... ( -38.40)
>DroSec_CAF1 31430 120 + 1
CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC
.(((..((((.((((.....))))....))))))).....(((((((.......((((((...((...))..))))))(((((((..........)))))))......)))))))..... ( -37.90)
>DroSim_CAF1 32750 120 + 1
CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC
.(((..((((.((((.....))))....))))))).....(((((((.......((((((...((...))..))))))(((((((..........)))))))......)))))))..... ( -37.90)
>DroEre_CAF1 32443 120 + 1
CCAGUCGGACUUCCGAUUCUCGGAUUACAUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUCCCGCCUUCCACUUGAUUAAACCC
..((((((....))))))....((((((((.......))))))))...(((((.(((((((((.((((...)))))))(((((.((.........))))))).))).)))..)))))... ( -33.90)
>DroYak_CAF1 31795 120 + 1
CAAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUAGAUUUUAUGAAGGGAGAACAGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUUAACCC
(((((.(((..(((((((..((.....))(((((....(((((......))))).))))).....)))))))......(((((((..........))))))).))))))))......... ( -36.20)
>consensus
CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC
..((((((((.((((.....))))....)))).......(((............((((((...(.....)..))))))(((((((..........)))))))...)))..))))...... (-32.02 = -32.62 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:31 2006