| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 33,600 – 33,692 |
| Length | 92 |
| Max. P | 0.870160 |
| Location | 33,600 – 33,692 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 71.04 |
| Mean single sequence MFE | -16.47 |
| Consensus MFE | -8.87 |
| Energy contribution | -8.65 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 33600 92 - 22224390 --CUG-UCCCUAAUCGAC--UUUACCCUUCGCAGCUUUGCACCAACAAAUACUAUUGUGCUUCGCAUUGCAAACCAAUGCCAAGGCAAUUCUAAACA --..(-((.......)))--............((..((((....((((......)))).(((.((((((.....)))))).)))))))..))..... ( -14.80) >DroGri_CAF1 7026 91 - 1 AAAUA-UAUAUUGUCAAC--U---UUCGUUGCAGCUUUGCAUCAGCAGCUGUUGCUGUGCUUUGCCCUGCAAACAAAUGCCAAGGCCAUAUUGAACA .((((-(....((.((((--.---...))))))(((((((((..(((((....)))))..(((((...)))))...))).)))))).)))))..... ( -20.90) >DroSim_CAF1 20627 92 - 1 --CUG-UCCCUAAUCGGC--UUUACCCUUCGCAGCUUUCCAUCAACAAAUACUAUUGUGCUUCGCAUUGCAAACAAAUGCCAAGGCAAUUCUAAACA --.((-(........(((--(...........))))........)))..((..(((((.(((.(((((.......))))).))))))))..)).... ( -10.89) >DroEre_CAF1 1945 92 - 1 --CUA-CUCCUAAUCCUC--AUCACUCUUCGCAGCUUUGCACCAACAAAUACUAUUGUGCUUCGCCUUGCAAACCAAUGCCAAGGCAAUUCUAAACA --...-............--..................((((..............))))...((((((((......)).))))))........... ( -13.24) >DroWil_CAF1 6201 95 - 1 --GUGAUCUGUGAUCUCCUGUUUUCACAUCAUAGCUCUUCAUCAGCAGCUUUUGCUGUGCUUUGCAUUGCAGACCAAUGCAAAGGCCAUUUUAAACA --((((..(((((..........))))))))).((.........(((((....))))).((((((((((.....))))))))))))........... ( -25.90) >DroAna_CAF1 3260 80 - 1 --------ACUUAUC---------CUUUUUUCAGCUCUCCAUCAGCAGAUACUCUUGUGCUUUGCCCUGCAAACCAAUGCCAAGGCCAUCCUGAAUA --------.......---------.....(((((.........((((.(......).))))..(((..(((......)))...)))....))))).. ( -13.10) >consensus __CUG_UCCCUAAUCGAC__UUUACUCUUCGCAGCUUUGCAUCAACAAAUACUAUUGUGCUUCGCAUUGCAAACCAAUGCCAAGGCAAUUCUAAACA .................................((((((((...((((......))))((........)).......)).))))))........... ( -8.87 = -8.65 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:15 2006