| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,421,082 – 4,421,192 |
| Length | 110 |
| Max. P | 0.645223 |
| Location | 4,421,082 – 4,421,192 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 93.29 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -25.16 |
| Energy contribution | -24.83 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4421082 110 - 22224390 AUAUACAUAGGUAUAUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUUGACUACUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGGCGCUUUAGCAAU (((((.(((((....))))).))))).....((((((......(((((((((.((.......)).)))))))))(((((.((..((....))..)))))))))))))... ( -27.20) >DroEre_CAF1 24537 104 - 1 A------UAGGUAUUUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUCGACCGCUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGGCGCUUUAGCAAU (------((((....)))))...........((((((......(((((((((((....)).....)))))))))(((((.((..((....))..)))))))))))))... ( -27.30) >DroYak_CAF1 24141 108 - 1 A--UACAUAGGUAUAUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUCGACUACUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGACGCUUUAGCAAU .--....(((((.(((((((((((.(((....))).)))))))))))..((((.((((((.....)))))))))).))))).((((..((((....))))..)))).... ( -26.70) >consensus A__UACAUAGGUAUAUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUCGACUACUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGGCGCUUUAGCAAU .......(((((.(((((((((((.(((....))).)))))))))))..((((.((((((.....)))))))))).))))).((((..((((....))))..)))).... (-25.16 = -24.83 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:45 2006