Locus 1486

Sequence ID X_DroMel_CAF1
Location 4,419,751 – 4,419,856
Length 105
Max. P 0.689540
window2380

overview

Window 0

Location 4,419,751 – 4,419,856
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 93.31
Mean single sequence MFE -27.50
Consensus MFE -24.19
Energy contribution -24.53
Covariance contribution 0.34
Combinations/Pair 1.09
Mean z-score -1.99
Structure conservation index 0.88
SVM decision value 0.33
SVM RNA-class probability 0.689540
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4419751 105 - 22224390
CCAUUCGGAUUCUCGUGUGUAUAUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAUAAAUAUGGGUAUAUAUACAUGAAUAUAUAGCUCGUAUACCCGUUUGUUUG
.((..(((....((((((((((((.(((....(((.......)))....((((....))))))).)))))))))))).(((((.....))))).)))..)).... ( -28.10)
>DroSec_CAF1 22300 102 - 1
CCAUUUGGAUUCUCGUGUGUAUUUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAU--AUACGAGUAU-UAUAUAUACAUAUAUAGCUCGUAUACCCGUUUGUUUG
.((..(((......((((((((((((((....((....))..)))).))))))))--))((((((..-((((((....))))))))))))....)))..)).... ( -25.80)
>DroSim_CAF1 23613 104 - 1
CCAUUCGGAUUCUCGUGUGUAUUUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAUAGAUACGAGUAU-UAUAUAUACAUAUAUAGCUCGUAUACCCGUUUGUUUG
.((..(((.......(((((((((((((....((....))..)))).))))))))).((((((((..-((((((....))))))))))))))..)))..)).... ( -28.60)
>consensus
CCAUUCGGAUUCUCGUGUGUAUUUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAUA_AUACGAGUAU_UAUAUAUACAUAUAUAGCUCGUAUACCCGUUUGUUUG
.((..(((.......(((((((((((((....((....))..)))).))))))))).((((((((...((((((....))))))))))))))..)))..)).... (-24.19 = -24.53 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:43 2006