| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,419,234 – 4,419,354 |
| Length | 120 |
| Max. P | 0.510825 |
| Location | 4,419,234 – 4,419,354 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.49 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -22.76 |
| Energy contribution | -23.56 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.91 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.510825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4419234 120 + 22224390 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAAAAAAUAUAAACA .....((((....)))).((((..................(.(((((...(((((....)))))....))))))(((((...(....)...)))))......)))).............. ( -24.80) >DroSec_CAF1 21796 118 + 1 UUUUCGACGGUCACGUCCCC-ACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAA-AAUUAUAAACA .....((((....))))...-.........(((.......(.(((((...(((((....)))))....))))))(((((...(....)...)))))........))).-........... ( -24.60) >DroSim_CAF1 23109 119 + 1 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGUGAGAUUAAUACUACACAUAGGAA-AAUUAUAAACA .....((((....)))).((((..................(.(((((...(((((....)))))....))))))(((((...(....)...)))))......))))..-........... ( -25.30) >DroEre_CAF1 22759 119 + 1 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAA-AAAUAUAAACA .....((((....)))).((((..................(.(((((...(((((....)))))....))))))(((((...(....)...)))))......))))..-........... ( -24.80) >DroYak_CAF1 22443 119 + 1 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAAGAA-AAAUAUAAUCC (((((((((....))))......................((((((((...(((((....)))))....))))(((((.....)))))......))))........)))-))......... ( -24.90) >consensus UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAA_AAAUAUAAACA .....((((....)))).............(((.......(.(((((...(((((....)))))....))))))(((((...(....)...)))))........)))............. (-22.76 = -23.56 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:40 2006