Locus 1483

Sequence ID X_DroMel_CAF1
Location 4,418,996 – 4,419,114
Length 118
Max. P 0.996414
window2376

overview

Window 6

Location 4,418,996 – 4,419,114
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.57
Mean single sequence MFE -32.86
Consensus MFE -28.55
Energy contribution -28.55
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -2.25
Structure conservation index 0.87
SVM decision value 2.69
SVM RNA-class probability 0.996414
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4418996 118 + 22224390
CUCCUACGCUCGAUGAAGAUCGAUUAACGAUUGGCAAUGUGUGUCGUUGGUCGAUUUCCUGCUUU--UACACAUUAACAGUCGUCCGGUGUCCGUAACCCCAUCUUUAUCGAUUGCUAAA
.......(((((((((((((.(....(((((((..((((((((..((.((.......)).))...--))))))))..)))))))..(((.......)))).)))))))))))..)).... ( -37.00)
>DroSec_CAF1 21558 118 + 1
CUCCCACACUCGAUGAAGAUCGAUAAACGAUUGGCAAUGUGUGUCGUCCGUCGAUUUCCUGUUUU--UACACAUUAACAGUCGUCCGGUGUCCGUAACCCCAUCUUUAUCGAUUGCUAAA
......((.(((((((((((.(....(((((((..(((((((((((.....))))..........--.)))))))..)))))))..(((.......)))).))))))))))).))..... ( -33.80)
>DroSim_CAF1 22871 118 + 1
CUCCCACACUCGAUGAAGAUCGAUAAACGAUUGGCAAUGUGUGUCGUCCGUCGAUUUCCUGCUUU--UACACAUUAACAGUCGUCCGGUGUCCGUAACCCCAUCUUUAUCGAUUGCUAAA
......((.(((((((((((.(....(((((((..(((((((((((.....))))..........--.)))))))..)))))))..(((.......)))).))))))))))).))..... ( -33.80)
>DroEre_CAF1 22531 108 + 1
----------CCAUGGAGAUCGAUAAACGAUUGGCAAUGUGUGUCGUCCGUCGAUUUCCUGCUUU--UACACAUUAACAGUCGUCCGGUGUCCGUAACCCCAUCUUUAUCGAUUGCUAAG
----------...(((..(((((((((((((((..(((((((((((.....))))..........--.)))))))..)))))))..(((.......)))......))))))))..))).. ( -31.20)
>DroYak_CAF1 22203 120 + 1
CUCUUGCGCCCUAUGGAGAUCGAUAAACGAUUGGCAAUGUGUGUCGUCCGUCGAUUUCCUGCUUCACAACACAUUAAUAGUCGUCCGGUGUCCGUAACCCCAUCUUUAUCGAUUGCUAAG
.............(((..(((((((((((((((..(((((((((((.....)))).............)))))))..)))))))..(((.......)))......))))))))..))).. ( -28.51)
>consensus
CUCCCACACUCGAUGAAGAUCGAUAAACGAUUGGCAAUGUGUGUCGUCCGUCGAUUUCCUGCUUU__UACACAUUAACAGUCGUCCGGUGUCCGUAACCCCAUCUUUAUCGAUUGCUAAA
..........((((((((((.(....(((((((..(((((((((((.....)))).............)))))))..)))))))..(((.......)))).))))))))))......... (-28.55 = -28.55 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:39 2006