Locus 148

Sequence ID X_DroMel_CAF1
Location 532,713 – 532,871
Length 158
Max. P 0.999889
window230 window231

overview

Window 0

Location 532,713 – 532,831
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.45
Mean single sequence MFE -22.36
Consensus MFE -18.64
Energy contribution -19.24
Covariance contribution 0.60
Combinations/Pair 1.08
Mean z-score -1.36
Structure conservation index 0.83
SVM decision value -0.01
SVM RNA-class probability 0.530709
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 532713 118 - 22224390
CAAAUUAAUUUCAAUUUGCCGUAAAUUAUUUGGCGCAUUC--UCCCAGCCAUGUAGAUUGCACAGCAAUUAACUGCAAAACAUUAACCGCAAACUAAGCGUAAGGUAAACAAGUAAUCGA
..............((((((((((.((((.((((......--.....)))).)))).))))...(((......)))...........(((.......)))...))))))........... ( -21.30)
>DroSec_CAF1 20718 117 - 1
CAAAUUAAUUUCAAUUUG-CGUAAAUUAUUUGGCGCAUUC--UCCCAGCCAUGUAGUUUGCACAGCAAUUAACUGCAAAACUUUAACCGCAAACUAAGCGUAAGGUAAACAAGUAAUCGA
...............(((-((((((((((.((((......--.....)))).)))))))))...(((......)))...((((((..(((.......)))))))))......)))).... ( -24.50)
>DroSim_CAF1 20875 118 - 1
CAAAUUAAUUUCAAUUUGCCGUAAAUUAUUUGGCGCAUUC--UCCCAGCCAUGUAGUUUGCACAGCAAUUAACUGCAAAACUUUAACCGCAAACUAAGCGUAAGGUAAACAAGUAAUCGA
..............(((((((((((((((.((((......--.....)))).)))))))))...(((......)))...........(((.......)))...))))))........... ( -25.30)
>DroEre_CAF1 24106 118 - 1
CAAAUUAAUUUCAAUUUGCCGUAAAUUAUUCGGCGCAUUC--UCACAGUCAUGUAGUUUGUACAGCAAUUAACUGCAAAACUUUAACCGCAAACUAAGCGUAAGGUAAACAAGUAAUCGA
.................((((.........))))(((..(--(.(((....)))))..)))...(((......)))...((((((..(((.......))))))))).............. ( -18.60)
>DroYak_CAF1 18483 120 - 1
CAAAUUAAUUUCAAUUUGCCGUAAAUUAUUCGGCGCAUUCCCUCACUGCCAUGCAGUUUGUGCAGCAAUUAACUGCAAAACUUUAACCGCAAACUAAGCGUAAGGUAAACAAGUAAUCGA
.................((((.........))))((((......(((((...)))))..)))).(((......)))...((((((..(((.......))))))))).............. ( -22.10)
>consensus
CAAAUUAAUUUCAAUUUGCCGUAAAUUAUUUGGCGCAUUC__UCCCAGCCAUGUAGUUUGCACAGCAAUUAACUGCAAAACUUUAACCGCAAACUAAGCGUAAGGUAAACAAGUAAUCGA
..............(((((((((((((((.((((.............)))).)))))))))...(((......)))...........(((.......)))...))))))........... (-18.64 = -19.24 +   0.60)

alignment

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secondary structure

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dotplot

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Window 1

Location 532,753 – 532,871
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.26
Mean single sequence MFE -32.64
Consensus MFE -28.74
Energy contribution -27.94
Covariance contribution -0.80
Combinations/Pair 1.20
Mean z-score -3.17
Structure conservation index 0.88
SVM decision value 4.40
SVM RNA-class probability 0.999889
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 532753 118 - 22224390
ACAUUUGAUUUGCUUGUGCAUUCUGCGGCGGCAUAUUACUCAAAUUAAUUUCAAUUUGCCGUAAAUUAUUUGGCGCAUUC--UCCCAGCCAUGUAGAUUGCACAGCAAUUAACUGCAAAA
.((.((((((.(((.(((((.((((((((((((.(((...............))).))))))........((((......--.....)))))))))).)))))))))))))).))..... ( -35.46)
>DroSec_CAF1 20758 117 - 1
ACACUUGAUUUGCUUGUGCAUUCUGCGGCGGCAUAUUACUCAAAUUAAUUUCAAUUUG-CGUAAAUUAUUUGGCGCAUUC--UCCCAGCCAUGUAGUUUGCACAGCAAUUAACUGCAAAA
.((.((((((.(((.(((((..(((((..(((...((((.((((((......))))))-.))))......(((.(.....--.))))))).)))))..)))))))))))))).))..... ( -34.30)
>DroSim_CAF1 20915 118 - 1
ACACUUGAUUUGCUUGUGCAUUCUGCGGCGGCAUAUUACUCAAAUUAAUUUCAAUUUGCCGUAAAUUAUUUGGCGCAUUC--UCCCAGCCAUGUAGUUUGCACAGCAAUUAACUGCAAAA
.((.((((((.(((.(((((..(((((((((((.(((...............))).))))))........((((......--.....)))))))))..)))))))))))))).))..... ( -34.26)
>DroEre_CAF1 24146 118 - 1
ACAUUUGGUUUGCUUGUGCAUUCUGUGGCGGCAUUUUACUCAAAUUAAUUUCAAUUUGCCGUAAAUUAUUCGGCGCAUUC--UCACAGUCAUGUAGUUUGUACAGCAAUUAACUGCAAAA
.((.((((((.(((.(((((..(((((.(((...(((((.((((((......))))))..)))))....))).)))....--..(((....)))))..)))))))))))))).))..... ( -26.20)
>DroYak_CAF1 18523 120 - 1
GCUUUUGGCUUGCUGGUGCAUUCUGUGGCGGCAUAUUACCCAAAUUAAUUUCAAUUUGCCGUAAAUUAUUCGGCGCAUUCCCUCACUGCCAUGCAGUUUGUGCAGCAAUUAACUGCAAAA
((..((((.(((((.(..((..(((((((((..........(((((......)))))((((.........))))...........)))))..))))..))..))))))))))..)).... ( -33.00)
>consensus
ACAUUUGAUUUGCUUGUGCAUUCUGCGGCGGCAUAUUACUCAAAUUAAUUUCAAUUUGCCGUAAAUUAUUUGGCGCAUUC__UCCCAGCCAUGUAGUUUGCACAGCAAUUAACUGCAAAA
.((.((((.(((((.(((((..(((((((((((.......................)))))).........(((.............))).)))))..)))))))))))))).))..... (-28.74 = -27.94 +  -0.80)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:57 2006