| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,411,536 – 4,411,654 |
| Length | 118 |
| Max. P | 0.834509 |
| Location | 4,411,536 – 4,411,654 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.69 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -21.54 |
| Energy contribution | -21.44 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4411536 118 + 22224390 CUCAAAUUGGCAGACUCUUCGUGUCUGGCGUGUAAAUAAAUACACAUACUUUGUUUGAAUUAAA--UAUAUUUAUGGGGCUGGUCGAAAAGUCUGUGUAGCGUAAAGACUAAAAGGAAAU .........(((((((.((((...(..(((((((......)))))...(((....(((((....--...))))).)))))..).)))).))))))).((((.....).)))......... ( -26.50) >DroEre_CAF1 14926 114 + 1 CUCAAAUUGGCAGACUCUUCGUGUCUGGUGUAUAAAUAAAU----AUACUUUGUUUGAAUUAAAU--AUAUUUGUGGAGCUGGUCGAAAAGUCUGUCUAGCGUAAAAGAGAAAAGGAAAA ........((((((((.((((...(..((......((((((----(((.((((.......)))))--))))))))...))..).)))).))))))))....................... ( -26.70) >DroYak_CAF1 14728 106 + 1 CUCAAAUUGGCAGACUCUUCGUGUCUAGUGCAUAAA--------------UUGUUUGAAUUUAAUAUAUAUUUAUGGAGCUGGCCGAAAAGUCUGUCUAGCGUAAAGAAAAGAAGGAAAA ........((((((((.((((.(.(((((.((((((--------------(((((.......))))...)))))))..)))))))))).))))))))....................... ( -26.70) >consensus CUCAAAUUGGCAGACUCUUCGUGUCUGGUGUAUAAAUAAAU____AUACUUUGUUUGAAUUAAAU_UAUAUUUAUGGAGCUGGUCGAAAAGUCUGUCUAGCGUAAAGAAAAAAAGGAAAA ........((((((((.((((...(((((.((((((((..............................))))))))..))))).)))).))))))))....................... (-21.54 = -21.44 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:25 2006