Locus 147

Sequence ID X_DroMel_CAF1
Location 532,256 – 532,370
Length 114
Max. P 0.526553
window229

overview

Window 9

Location 532,256 – 532,370
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.68
Mean single sequence MFE -34.52
Consensus MFE -21.75
Energy contribution -21.38
Covariance contribution -0.38
Combinations/Pair 1.26
Mean z-score -1.70
Structure conservation index 0.63
SVM decision value -0.01
SVM RNA-class probability 0.526553
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 532256 114 - 22224390
CCAAGGAUUCUCAGGCACA-UGGCAUAUGCUUGCCACUUGAUUUGCGAACAUGUAUUUGAUGUCUAAUGCU-----GGAGAGUUCUGAGGCCUACCUCUGAAAAUGCUGUCCGCAUUUAU
...(((((((((.((((..-(((((......)))))...(((...((((......))))..)))...))))-----.)))))))))((((....))))...((((((.....)))))).. ( -34.70)
>DroSim_CAF1 20391 115 - 1
CGAAGGAUUCUCAGGCACAAUGGCAUAUGCUUGCCACUUGAUUUGCGAACUUGUCUUUGAUGUCUGAUGCU-----GGAGAGUUUUGAGGCCUACCUCUGAAAACGCUUUCGGCAUUAAU
((((((.(((.((((..((((((((......))))).))).)))).)))....)))))).....(((((((-----((((.(((((((((....))))..)))))..))))))))))).. ( -34.90)
>DroEre_CAF1 23624 120 - 1
ACAAGGAUUCUCGGGCACAAUGGCAUAUGUUUGCCACUUCAUUUGCGAACUUGCCUUUGAUGUCUAAUGUCGUAGUGGGUAGUUUUGAGGCCUUCCUUUGAAAAUGCUUUCGGCAUUAAU
............((((((((.((((...((((((..........)))))).)))).))).)))))(((((((....(((((.(((..(((.....)))..))).))))).)))))))... ( -34.50)
>DroYak_CAF1 17936 115 - 1
UCGAGGAUUCUCAGGCACAAUGGCAUCUGCUUGCCACUUCAUUUGCGAACUCGCCUUUGAUGUCUAAUGCC-----GGGUACUUUGGAGGCCUGCCUGUGAAAAUGCUUUACGCAUUAAU
.......(((.((((((...(((((......)))))................(((((..(.((((......-----.)).)).)..))))).)))))).)))(((((.....)))))... ( -34.00)
>consensus
CCAAGGAUUCUCAGGCACAAUGGCAUAUGCUUGCCACUUCAUUUGCGAACUUGCCUUUGAUGUCUAAUGCC_____GGAGAGUUUUGAGGCCUACCUCUGAAAAUGCUUUCCGCAUUAAU
............(((((((((((((......)))))........(((....)))..))).)))))((((((.....((....(((.((((....)))).)))....))...))))))... (-21.75 = -21.38 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:52 2006