| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,405,420 – 4,405,540 |
| Length | 120 |
| Max. P | 0.912249 |
| Location | 4,405,420 – 4,405,540 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.17 |
| Mean single sequence MFE | -44.10 |
| Consensus MFE | -34.88 |
| Energy contribution | -35.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4405420 120 + 22224390 CCACAGGAGGGUGGCUGGCGGCAUUGCAGGAAUGGCUGGUCGCAGGACAGGUCAGAAGAGAAAAGAACAGGUGUGUAACCUGAAUCUGUCGCCCCGUGAAAACCAUCAGCUGCACUGUGC .(((((....(..(((((.(((...(((((..(((((.(((....))).))))).............(((((.....)))))..))))).)))..((....))..)))))..).))))). ( -41.90) >DroSec_CAF1 8020 120 + 1 CCGCAGGAGGGUGGUAGGCGGCAGGGCAGGAAUGACUGGUCGCAGGACAGGUCAGAAGAGAAAAGAACAGGUGUGUAACCUGAAUCUGUCGCCCCGUGAAAACCAUCAGCUGCACUGCGA .(((((..((.((((.(((((((((.......(((((.(((....))).))))).............(((((.....)))))..)))))))))..((....)).)))).))...))))). ( -47.00) >DroSim_CAF1 8111 120 + 1 CCGCAGGAGGGUGGCAGGCGGCAGGGCAGGAAUGACUGGUCGCAGGACAGGUCAGAAGAGAAAAGAACAGGUGUGUAACCUGAAUCUGUCGCCCCGUGAAAAACAUCAGCUGCACUGCGA .(((((....(..((.(((((((((.......(((((.(((....))).))))).............(((((.....)))))..)))))))))..((.....))....))..).))))). ( -47.20) >DroEre_CAF1 8716 120 + 1 CCGCAGGCGGGUGGCAGGCGGCAUUCCAGGAAUGGGUGGUCGCAGGACAGGUCAGAAGAGAACAGAACAGGUGUGUAACCUGAAUCUGUCGCCCUGUGAAAACCAUCAGCUGCACUGAGC (((....)))....((((((((((((...)))).(((..(((((((.(...((....))((.((((.(((((.....)))))..))))))).)))))))..)))....))))).)))... ( -43.50) >DroYak_CAF1 8217 120 + 1 CCGCAGAAGGGUGGCAGGCGGUAUUGCAGAAAUGGGUUGUCGCAGGACAGGUCAGAAGAGAAAUGAACAGGUGUGUAACCUGAAUCUGUCGCCCCGUGAAAACCAUCAACUGCACUGAGC ..((((..((((((((((((..(.(.((....)).).)..)))....((..((......))..))..(((((.....)))))...))))))))).((....))......))))....... ( -40.90) >consensus CCGCAGGAGGGUGGCAGGCGGCAUUGCAGGAAUGGCUGGUCGCAGGACAGGUCAGAAGAGAAAAGAACAGGUGUGUAACCUGAAUCUGUCGCCCCGUGAAAACCAUCAGCUGCACUGAGC .(((((....(..((.((.(((...(((((..(((((.(((....))).))))).............(((((.....)))))..))))).))))).(((......)))))..).))))). (-34.88 = -35.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:07 2006