| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,403,221 – 4,403,324 |
| Length | 103 |
| Max. P | 0.557581 |
| Location | 4,403,221 – 4,403,324 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.42 |
| Mean single sequence MFE | -26.05 |
| Consensus MFE | -22.26 |
| Energy contribution | -22.02 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4403221 103 - 22224390 ACAC---AGCCGUUCCUCAU--------CUCGUCUAAAACUGAGCUAGCCGACGAUCGGCAACCGGCUUAUAUUAGCUCGCACCACACG------GACCUAUUGACCCACGGCUAAUUGC ....---((((((...(((.--------...((((.....(((((((((((.....)))).............)))))))........)------)))....)))...))))))...... ( -26.33) >DroSec_CAF1 5819 106 - 1 ACACAACAGCCGUUCCUCAU--------CUCGUCUAUAACUGAGCUAGCCGACGAUCGGCAACCGGCUUAUAUUAGCUCGCACCACACG------GACCUAUUGACCCACGGCUAAUUGC .......((((((...(((.--------...((((.....(((((((((((.....)))).............)))))))........)------)))....)))...))))))...... ( -26.33) >DroSim_CAF1 5904 112 - 1 ACACAACAGCCGUUCCUCAU--------CUCGUCUAUAACUGAGCUAGCCGACGAUCGGCAACCGGCUUAUAUUAGCUCGCACCACACGGACUCGGACCUAUUGACCCACGGCUAAUUGC .......((((((...(((.--------...((((......((((((((((.....)))).............))))))...((....))....))))....)))...))))))...... ( -29.01) >DroEre_CAF1 6570 103 - 1 ACAC---AGCUGUUCCUCAU--------CUCGUCUAUAACUGAGCUAGCCGACGAUCGGCAACCGGCUUAUAUUAGCUCGCACCACACG------AACCUAUUGACCCACGGCUAAUUGC ....---((((((...(((.--------.((((.......(((((((((((.....)))).............)))))))......)))------)......)))...))))))...... ( -22.73) >DroYak_CAF1 6023 115 - 1 ACAC---AGCUGUUCCUCAUCUCUAUAUCUCGUCUAUAACUGAGCUAGCCGACGAUCGGCAACCGGCUUAUAUUAGCUCGCACCACACGGAC--GGACCUAUUGACCCACGGCUAAUUGC ....---((((((...(((....((..((.(((((.....(((((((((((.....)))).............)))))))........))))--)))..)).)))...))))))...... ( -25.83) >consensus ACAC___AGCCGUUCCUCAU________CUCGUCUAUAACUGAGCUAGCCGACGAUCGGCAACCGGCUUAUAUUAGCUCGCACCACACG______GACCUAUUGACCCACGGCUAAUUGC .......((((((...(((...........(((.......(((((((((((.....)))).............)))))))......))).............)))...))))))...... (-22.26 = -22.02 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:04 2006