Locus 1463

Sequence ID X_DroMel_CAF1
Location 4,402,173 – 4,402,289
Length 116
Max. P 0.662652
window2334

overview

Window 4

Location 4,402,173 – 4,402,289
Length 116
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -18.45
Consensus MFE -14.40
Energy contribution -14.40
Covariance contribution 0.00
Combinations/Pair 1.18
Mean z-score -1.59
Structure conservation index 0.78
SVM decision value 0.27
SVM RNA-class probability 0.662652
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4402173 116 + 22224390
UCUCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGC---AGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUCGCUUAUUCCAUCAAA
(((((((((((((..............))))))))))(((....---))).....)))............((.(((((((..((.........)).))))))).))............. ( -17.84)
>DroSec_CAF1 4788 119 + 1
UCCCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGCAGCAGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGCUGUUUCUUCGUUUAUUCCAUCAAA
..(((((((((((..............)))))))))))...((.((((((...((((...))))......((..(....)..)).........)))))).))................. ( -20.94)
>DroSim_CAF1 4863 119 + 1
UACCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGCAGCAGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGCUGUUUCUUCGUUUAUUCCAUCAAA
..(((((((((((..............)))))))))))...((.((((((...((((...))))......((..(....)..)).........)))))).))................. ( -21.14)
>DroEre_CAF1 5137 113 + 1
UCCCAAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUC------AGCAUCAUAGAAACUUUAAUCCCGCAAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUUUUUCAUUUCAUCAAA
..(((((((((((..............)))))))))))...------........((((((.........(((.(....).)))............))))))................. ( -17.34)
>DroYak_CAF1 4971 113 + 1
ACCCAAUAACGAAUUCAAUAAAUUAAUUUGGUUUUUGGCGC------AGCAUCGAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUCUUUCAUUCCAUCAAA
....((((((((..((((.........))))(((((((((.------.(.((..(((...)))..))).))))))))).............)))))))).................... ( -15.00)
>consensus
UCCCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGC___AGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUCGUUUAUUCCAUCAAA
..(((((((((((..............)))))))))))................................((.(((((((..((.........)).))))))).))............. (-14.40 = -14.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:01 2006