| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,400,716 – 4,400,809 |
| Length | 93 |
| Max. P | 0.600759 |
| Location | 4,400,716 – 4,400,809 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 90.44 |
| Mean single sequence MFE | -20.93 |
| Consensus MFE | -17.67 |
| Energy contribution | -17.67 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4400716 93 + 22224390 AAUUGCGUAUACGCACUUUCUUGCUGCGUGCGUCAGUUUUUUUUUUUUUUAUACGAUCACUCAGAUCGGAUGGCGUAUAAACGUAUAUCUACU ((((((((..((((((......).)))))))).)))))...............(((((.....)))))((((((((....)))).)))).... ( -20.80) >DroSec_CAF1 3438 86 + 1 AAUUGCGUAUACGCACUUUCUUGCUGCGUGCGUCAAUGU-------UUUUAUACGAUCGCUCAGAUCGGAUGCCAUAUAAACGUAUAUCUACU ...(((((..((((((......).)))))(((((.(((.-------...))).(((((.....)))))))))).......)))))........ ( -21.10) >DroSim_CAF1 3469 86 + 1 AAUUGCGUAUACGCACUUUCUUGCUGCGUGCGUCAAUUU-------UUUUAUACGAUCGCUCAGAUCGGAUGGCAUAUAAACGUAUAUCCACU ((((((((..((((((......).)))))))).))))).-------.......(((((.....)))))..(((.(((((....)))))))).. ( -20.90) >consensus AAUUGCGUAUACGCACUUUCUUGCUGCGUGCGUCAAUUU_______UUUUAUACGAUCGCUCAGAUCGGAUGGCAUAUAAACGUAUAUCUACU ...(((((..((((((...........))))))....................(((((.....)))))............)))))........ (-17.67 = -17.67 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:00 2006