Locus 1460

Sequence ID X_DroMel_CAF1
Location 4,398,838 – 4,398,946
Length 108
Max. P 0.588434
window2331

overview

Window 1

Location 4,398,838 – 4,398,946
Length 108
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 80.40
Mean single sequence MFE -34.03
Consensus MFE -20.39
Energy contribution -19.70
Covariance contribution -0.69
Combinations/Pair 1.32
Mean z-score -1.71
Structure conservation index 0.60
SVM decision value 0.11
SVM RNA-class probability 0.588434
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4398838 108 + 22224390
CUUUUGUGUGGCCUUCUUGGUCACCCGGUUGGGAUUCUCGAUUUCGAUGAGUGAGGCCACGCCCUUCUUGGCAUCGCGCGCUUCCGCUUCGGAGUCAUCGUCGGA-----AUC
(..(((.((((((.....)))))).)))..)........(((((((((((((((.((((.........)))).))))..(.(((((...))))).).))))))))-----))) ( -37.70)
>DroVir_CAF1 2598 111 + 1
UUUUUGUGUGGCCUUUUUGGUCACACGAUUGGGAUUCUCGAUUUCGAUAAGUGCGGCCACACCCUUUUUGGCAUCACGUUGAUCCGCCUCCGAAUCAUCAUCG--CUGUCAUC
.....((((((((.....))))))))((((.(((....((...(((((..(((..((((.........))))..))))))))..))..))).)))).......--........ ( -32.40)
>DroWil_CAF1 4236 108 + 1
UUUUUGAGUGGCCUUCUUGGUCACACGAUUGGGAUUCUCGAUUUCGAUGAGAGAUGCCACACCCUUCUUGGCAUCACGUGCUUCAGCCUCAGAGUCAUCUUCGGA-----UUC
.......((((((.....)))))).(((....((((((((....)))((((.(((((((.........)))))))....((....)))))))))))....)))..-----... ( -34.80)
>DroMoj_CAF1 2233 111 + 1
CUUUUGGGUGGCCUUUUUGGUCACACGGUUGGGAUUCUCGAUUUCGAUAAGCGCGGCCACACCCUUCUUGGCAUCCCGUACUUCUGUCUCCGAAUCAUCAUCA--CUGUCAUC
..(((((((((((.....))))))((((.((((((..(((....)))........((((.........)))))))))).....))))..))))).........--........ ( -28.60)
>DroAna_CAF1 1697 105 + 1
UUUCUGCGUAGCCUUCUUGGUCACACGGUUGGGGUUUUCGAUUUCAAUGAGCGAUGCCACGCCCUUUUUGGCAUCGCGCGCUUCCCCUUCUGACU---CGUCAGA-----UUC
...(((.((..((.....))..)).)))..((((....((..........(((((((((.........))))))))).))...)))).(((((..---..)))))-----... ( -34.80)
>DroPer_CAF1 1645 108 + 1
UUUCUGGGUGGCCUUUUUGGUCACACGGUUGGGAUUCUCGAUUUCGAUGAGCGAGGCCACGCCCUUUUUGGCAUCUCGCGCCUCUGCUUCUGAGUCAUCCUCGGA-----CUC
..(((((((((((.....))))))..((....((((((((....))).((((((((((..(((......))).....).))))).))))..)))))..)))))))-----... ( -35.90)
>consensus
UUUUUGGGUGGCCUUCUUGGUCACACGGUUGGGAUUCUCGAUUUCGAUGAGCGAGGCCACACCCUUCUUGGCAUCACGCGCUUCCGCCUCCGAGUCAUCAUCGGA_____AUC
(..(((.((((((.....)))))).)))..).((((((((....)))...(((..((((.........))))....)))............)))))................. (-20.39 = -19.70 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:59 2006