| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,393,922 – 4,394,016 |
| Length | 94 |
| Max. P | 0.978122 |
| Location | 4,393,922 – 4,394,016 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 98.94 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -24.70 |
| Energy contribution | -24.46 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.958918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4393922 94 + 22224390 UCGUUCGUGUUCGCACGGCCAUUUAACAAUACGAUUUGUUGAUUUUUUUUGUAACAAAAUUAUUUUCGUUUGGCUUAGUGUGCCCGCCGGCGGG ((((..(((..((((((((((.(((((((......)))))))....(((((...)))))...........)))))..)))))..)))..)))). ( -25.50) >DroSec_CAF1 2038 94 + 1 UCGUUCGUGUUCGCACGGCCAUUUAACAAUACGAUUUGUUGAUUUUUUUUGUAACAAAAUUAUUUUCGUUUGGCUUAGUGUGCCCGCCGGCGGG ((((..(((..((((((((((.(((((((......)))))))....(((((...)))))...........)))))..)))))..)))..)))). ( -25.50) >DroSim_CAF1 3034 93 + 1 UCGUUCGUGUUCGCACGGCCAUUUAACAAUACGAUUUGUUGAUUU-UUUUGUAACAAAAUUAUUUUCGUUUGGCUUAGUGUGCCCGCCGGCGGG ((((..(((..((((((((((.(((((((......)))))))...-(((((...)))))...........)))))..)))))..)))..)))). ( -25.50) >DroEre_CAF1 2020 94 + 1 UCGUUCGUGUUCGCACGGCCAUUUAACAAUACGAUUUGUUGAUUUUUUUUGUAACAAAAUUAUUUUCGUUUGGUUUAGUGUGCCCGCCGGCGGG ((((..(((..(((((.((((.(((((((......)))))))....(((((...)))))...........))))...)))))..)))..)))). ( -23.50) >DroYak_CAF1 2053 94 + 1 UCGUUCGUGUUCGCACGGCCAUUUAACAAUACGAUUUGUUGAUUUUUUUUGUAACAAAAUUAUUUUCGUUUGGUUUAGUGUGCCCGCCGGCGGG ((((..(((..(((((.((((.(((((((......)))))))....(((((...)))))...........))))...)))))..)))..)))). ( -23.50) >consensus UCGUUCGUGUUCGCACGGCCAUUUAACAAUACGAUUUGUUGAUUUUUUUUGUAACAAAAUUAUUUUCGUUUGGCUUAGUGUGCCCGCCGGCGGG ((((..(((..((((((((((.(((((((......)))))))....(((((...)))))...........)))))..)))))..)))..)))). (-24.70 = -24.46 + -0.24)
| Location | 4,393,922 – 4,394,016 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 98.94 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -18.44 |
| Energy contribution | -18.84 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4393922 94 - 22224390 CCCGCCGGCGGGCACACUAAGCCAAACGAAAAUAAUUUUGUUACAAAAAAAAUCAACAAAUCGUAUUGUUAAAUGGCCGUGCGAACACGAACGA ..(((((((.(((.......))).(((((((....)))))))............(((((......))))).....)))).)))........... ( -20.80) >DroSec_CAF1 2038 94 - 1 CCCGCCGGCGGGCACACUAAGCCAAACGAAAAUAAUUUUGUUACAAAAAAAAUCAACAAAUCGUAUUGUUAAAUGGCCGUGCGAACACGAACGA ..(((((((.(((.......))).(((((((....)))))))............(((((......))))).....)))).)))........... ( -20.80) >DroSim_CAF1 3034 93 - 1 CCCGCCGGCGGGCACACUAAGCCAAACGAAAAUAAUUUUGUUACAAAA-AAAUCAACAAAUCGUAUUGUUAAAUGGCCGUGCGAACACGAACGA ..(((((((.(((.......))).(((((((....)))))))......-.....(((((......))))).....)))).)))........... ( -20.80) >DroEre_CAF1 2020 94 - 1 CCCGCCGGCGGGCACACUAAACCAAACGAAAAUAAUUUUGUUACAAAAAAAAUCAACAAAUCGUAUUGUUAAAUGGCCGUGCGAACACGAACGA ..(((((((((..........)).(((((((....)))))))............(((((......))))).....)))).)))........... ( -18.00) >DroYak_CAF1 2053 94 - 1 CCCGCCGGCGGGCACACUAAACCAAACGAAAAUAAUUUUGUUACAAAAAAAAUCAACAAAUCGUAUUGUUAAAUGGCCGUGCGAACACGAACGA ..(((((((((..........)).(((((((....)))))))............(((((......))))).....)))).)))........... ( -18.00) >consensus CCCGCCGGCGGGCACACUAAGCCAAACGAAAAUAAUUUUGUUACAAAAAAAAUCAACAAAUCGUAUUGUUAAAUGGCCGUGCGAACACGAACGA ..(((((((.(((.......))).(((((((....)))))))............(((((......))))).....)))).)))........... (-18.44 = -18.84 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:57 2006