Locus 1457

Sequence ID X_DroMel_CAF1
Location 4,390,268 – 4,390,380
Length 112
Max. P 0.593849
window2326

overview

Window 6

Location 4,390,268 – 4,390,380
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -28.92
Consensus MFE -25.72
Energy contribution -26.56
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.24
Structure conservation index 0.89
SVM decision value 0.12
SVM RNA-class probability 0.593849
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4390268 112 + 22224390
UCAACAAUAGCAUUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGGCAUUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACGUAUG
.........(((.....((.(((((((((.....(((...)))((((((((((((........)))))).)).)))).......))))))..))).)).))).......... ( -32.00)
>DroSec_CAF1 2037 112 + 1
UCAACAAUAGCGAUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGACACUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACAUAUG
.........(((.....((.(((((((((.....(((...)))((((((((((.(........).)))).)).)))).......))))))..))).)).))).......... ( -24.20)
>DroSim_CAF1 2060 112 + 1
UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGGCACUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACAUAUG
.......(((.((....((.(((((((((.....(((...)))((((((((((((........)))))).)).)))).......))))))..))).))..)).)))...... ( -32.90)
>DroEre_CAF1 2165 112 + 1
UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGACGAGCAGUGCGGCACUAUAUAGCCGCAUCUCCCUCGAAUUCCCACUGUUCUACCGACUGCACUACGUAUG
.........((((......((((.((((((....)).......((((((((((((........))))).((......))......))))))).))))..))))..))))... ( -27.40)
>DroYak_CAF1 2209 112 + 1
UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGACGAGCAGUGCGGCACUAUAUAGCCGCAUCUCCCUCGAACUCCCACUGUUCUACCGCCUGCACUACGUAUG
.........((((............((((((..((........(((..(((((((........)))))))....)))((((.......))))...))..))))))))))... ( -28.10)
>consensus
UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGGCACUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACGUAUG
.........................((((((..((.....((((((..(((((((........))))))))))))).((((.......))))...))..))))))....... (-25.72 = -26.56 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:54 2006