Locus 1451

Sequence ID X_DroMel_CAF1
Location 4,376,078 – 4,376,171
Length 93
Max. P 0.940653
window2317

overview

Window 7

Location 4,376,078 – 4,376,171
Length 93
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 90.26
Mean single sequence MFE -14.38
Consensus MFE -11.88
Energy contribution -12.38
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.83
SVM decision value 1.31
SVM RNA-class probability 0.940653
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4376078 93 - 22224390
UCGCCCAACGUCUAUUUUGAACAA--------CAAAUAAACGAAA-AAAGAGCACUUAGUCAUCACAUCACAAUAAGUGCAACAGCAACAAAUUGGCUU-UUA
..(((...(((.(((((.......--------.))))).)))...-.....(((((((...............)))))))..............)))..-... ( -15.66)
>DroSec_CAF1 161387 92 - 1
UCGCCCAACGUCUAUUUUGAACAA--------CAAAUAAACGAAA-AAAGAGCACUUAGUCAUCACAUCA-AAUAAGUGCAACAGCAACAACUUGGCUU-UUA
..(((...(((.(((((.......--------.))))).)))...-.....(((((((............-..)))))))..............)))..-... ( -15.74)
>DroSim_CAF1 148858 92 - 1
UCGCCCAACGUCUAUUUUGAACAA--------CAAAUAAACGAAA-AAAGAGCACUUAGUCAUCACAUCA-AAUAAGUGCAACAGCAACAACUUGGCUU-UUA
..(((...(((.(((((.......--------.))))).)))...-.....(((((((............-..)))))))..............)))..-... ( -15.74)
>DroYak_CAF1 164564 102 - 1
UCGCCCAACGUCUAUUUAAAACAAAAAAACAAGAUAUAAACGAAAAAAAGAGCACUUAGUCAUCACAUCA-AAUAAGUGCAACAGCAACAACUUGACAACUUA
..((....(((.(((....................))).))).........(((((((............-..)))))))....))................. ( -10.39)
>consensus
UCGCCCAACGUCUAUUUUGAACAA________CAAAUAAACGAAA_AAAGAGCACUUAGUCAUCACAUCA_AAUAAGUGCAACAGCAACAACUUGGCUU_UUA
..(((...(((.(((((................))))).))).........(((((((...............)))))))..............)))...... (-11.88 = -12.38 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:46 2006