| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,370,842 – 4,370,935 |
| Length | 93 |
| Max. P | 0.653885 |
| Location | 4,370,842 – 4,370,935 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.34 |
| Mean single sequence MFE | -17.96 |
| Consensus MFE | -9.63 |
| Energy contribution | -10.35 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4370842 93 - 22224390 UUUCCGUUAAGGACACCA-UCAAGCGCCAAUUUCCACAGCUUGUCAACCGCAAGGCCAAAUGUGG------------CCAAAUCCACCAUCCACCACCUA-------CCACCC ..........(((.....-.(((((.............)))))..........(((((....)))------------))...)))...............-------...... ( -16.62) >DroSec_CAF1 156238 86 - 1 ----CAUUAAGGACGCCA-UCAAGCGCCAAUUUCCACAGCUUGUCAACCGCAAGGCCAAAUGUGG------------UCAAAUCCGC---CCACCACCUA-------CCACCC ----......((.(((..-....))))).....(((((..(((....((....)).))).)))))------------..........---..........-------...... ( -17.10) >DroSim_CAF1 143720 90 - 1 UUUCCGUUAAGGACGCCA-UCAAGCGCCAAUUUCCACAGCUUGUCAACCGCAAGGCCAAAUGUGG------------CCAAAUCCGC---CCACAACCUA-------CCACCC ..........(((.((..-.(((((.............)))))......))..(((((....)))------------))...)))..---..........-------...... ( -18.12) >DroEre_CAF1 166860 95 - 1 UUUCCGUUAAGGACGCCA-UCAAGCGCCAAUUUCCACAGCUUGCCAACCGCAAGGCCA--UGUGG------------CUAAAUCCGC---CCACUACACACCAACCACCACCC ..(((.....))).((((-((((((.............)))))....((....))...--.))))------------).........---....................... ( -17.62) >DroYak_CAF1 158522 90 - 1 UUUCCGUUAAGGACGCCA-UCAAGCGCCAAUUUCCACAGCUUGUCAACCGCAAGGCCAAAUGUGG------------CCAAAUCCGC---CCACUACUUA-------CCACCC ..........(((.((..-.(((((.............)))))......))..(((((....)))------------))...)))..---..........-------...... ( -18.12) >DroAna_CAF1 188043 100 - 1 UUUUUUCAAAAGCUGCCUUUGAAGCGCCAAUUUCAACACAAUUUCGACCGCAAGGACGCAGGUCCUUCAUCAGGCUUCCGAGUCCCGA------GUCCUU-------CUCCUC ....(((..(((((.....(((((.(((..........(......).((....)).....))).)))))...)))))..)))....((------(.....-------)))... ( -20.20) >consensus UUUCCGUUAAGGACGCCA_UCAAGCGCCAAUUUCCACAGCUUGUCAACCGCAAGGCCAAAUGUGG____________CCAAAUCCGC___CCACCACCUA_______CCACCC ..........((.(((.......))))).....(((((...((....((....)).))..)))))................................................ ( -9.63 = -10.35 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:41 2006