Locus 1447

Sequence ID X_DroMel_CAF1
Location 4,362,210 – 4,362,324
Length 114
Max. P 0.813941
window2307

overview

Window 7

Location 4,362,210 – 4,362,324
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.62
Mean single sequence MFE -25.06
Consensus MFE -15.26
Energy contribution -15.86
Covariance contribution 0.60
Combinations/Pair 1.13
Mean z-score -2.24
Structure conservation index 0.61
SVM decision value 0.66
SVM RNA-class probability 0.813941
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4362210 114 - 22224390
GUCUCCCUGCAUAUAUCUCCAAAAGAUAUACACACACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCCUGCUCCUCCUGCCAUUAAAAUUACACAUUUUA
((((..((((.(((((((.....)))))))..((.....)).)))).)))).(((((((((.(((((...........))))).....))).))))))................ ( -29.40)
>DroSec_CAF1 147787 103 - 1
GUCUCCCUGCAUAUAUCUCCAAAAGAUAUACAC--ACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCC---------UGCCAUCAAAGUUACACAUUUUA
((((..((((.(((((((.....)))))))((.--....)).)))).)))).(((((((((...(((........))).)))---------.))))))................ ( -29.50)
>DroSim_CAF1 135526 103 - 1
AUCUCCCUGCAUAUAUCUCCAAAAGAUAUAUAC--ACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCC---------UGUCAUUAAAGUUACACAUUUUA
..(((((((.((((((((.....)))))))).)--)....))).))..(((((((((((...............)))))).)---------))))................... ( -23.86)
>DroEre_CAF1 156432 98 - 1
-----------GAUAUCUUCAUAAGAUACACAC--ACACUGGGCAGUAGGCAGAUGACGGAGAGGACAAGAAAACGUCGUCCUGCU---CCCGCCAUCAAAAUUACACAUUUUA
-----------..(((((.....))))).....--......(((.(..(((((((((((...............)))))).)))))---..))))................... ( -22.06)
>DroYak_CAF1 150146 98 - 1
-----------GAUAUCUUCAUAAGAUAUACAC--ACACUGGGCAGUAGACAGAUGGCGAAAAGGACAAGAAAACGUCGUCCUACU---CCCGCCAUUAAAAUUACACAUUUUA
-----------.((((((.....))))))....--.....(((.(((((...(((((((...............))))))))))))---)))...................... ( -20.46)
>consensus
_UCUCCCUGCAUAUAUCUCCAAAAGAUAUACAC__ACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCCU_CU___CCUGCCAUUAAAAUUACACAUUUUA
...........(((((((.....)))))))...............((((...(((((((...(((((...........)))))........)))))))....))))........ (-15.26 = -15.86 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:38 2006