Locus 1445

Sequence ID X_DroMel_CAF1
Location 4,358,376 – 4,358,473
Length 97
Max. P 0.936092
window2305

overview

Window 5

Location 4,358,376 – 4,358,473
Length 97
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -18.11
Consensus MFE -9.63
Energy contribution -10.35
Covariance contribution 0.72
Combinations/Pair 1.12
Mean z-score -2.69
Structure conservation index 0.53
SVM decision value 1.25
SVM RNA-class probability 0.936092
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4358376 97 - 22224390
CAACUUGCACCACCA---CCAC------CCCUACCUCUAC---GUUCUACGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU
((((..((((((...---....------...........(---(.....)).....(((.........)))................)))))).))))........... ( -17.40)
>DroSec_CAF1 144064 95 - 1
CAACUUGCACCACCAGCACCAC------CCCCACC--------CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU
((((..((((((..(((.....------.......--------.......)))...(((.........)))................)))))).))))........... ( -17.51)
>DroEre_CAF1 152690 86 - 1
CAACUUGCACCGG---------------CACCACC--------CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU
((((..(((((((---------------(......--------.......)))...(((.........))).................))))).))))........... ( -17.32)
>DroYak_CAF1 146265 92 - 1
CAACUUGCCCCAACA---GCAC------CACCACC--------CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU
..........(((((---((((------((.....--------......((...))(((.........)))................)))))))))))........... ( -21.60)
>DroMoj_CAF1 236535 98 - 1
CUACCUGGCCCGCGC---CCAC------CUGCCCC--CAUCGCCCGAUUUUCCUCGGGCUUCAUUUAUGCCGAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUUUC
......(((....))---)((.------(.((...--....((((((......)))))).........(((((((.........))))))))).).))........... ( -20.90)
>DroAna_CAF1 172934 98 - 1
CCACUGCCACUGCCA---CCGCCCCCGCCAGCCCC--------CCUUUUCACUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCCU
..........(((.(---(.((.......(((((.--------............)))))........(((((((.........))))))))).)).).))........ ( -13.92)
>consensus
CAACUUGCACCACCA___CCAC______CACCACC________CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU
((((..(((((.............................................(((.........)))((((.........))))))))).))))........... ( -9.63 = -10.35 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:36 2006