Locus 1443

Sequence ID X_DroMel_CAF1
Location 4,347,386 – 4,347,498
Length 112
Max. P 0.991310
window2303

overview

Window 3

Location 4,347,386 – 4,347,498
Length 112
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 85.79
Mean single sequence MFE -28.96
Consensus MFE -21.88
Energy contribution -23.40
Covariance contribution 1.52
Combinations/Pair 1.08
Mean z-score -3.01
Structure conservation index 0.76
SVM decision value 2.26
SVM RNA-class probability 0.991310
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4347386 112 - 22224390
AAUUUAUCUUCAAACUUAUUCAUACAUCGGUUUUU-CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGCGGGCCAACUUAUGGCGCAUAAAUUGUCGA
................((((..(((((.((.....-.)).)))))..)))).....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -34.60)
>DroSec_CAF1 132990 100 - 1
AAUUUAUCUUCAAACUUAU------------UUUU-CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA
...................------------....-....((((....))))....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -28.10)
>DroSim_CAF1 126431 100 - 1
AAUUUAUCUUCAAACUUAU------------UUUU-CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA
...................------------....-....((((....))))....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -28.10)
>DroEre_CAF1 141418 112 - 1
AGUUUAUCCUCAAACUUAUUCAUAUAUCUGUUUUU-CCCCGUGUGGUAAUACUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA
(((((......)))))...................-....((((....))))....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -29.70)
>DroYak_CAF1 135203 101 - 1
AUUUUAUCUUCAAACUUAUUCGCAUAUCUGUUUUUGCCCCGUGUGGUAAUGCUCUUUUGGCAAUUUAUGCCGCCGCACAC------------UUAUGGCGCAUAAAUUGUCCA
.....................((((.........((((......))))))))......((((((((((((.((((.....------------...)))))))))))))))).. ( -24.30)
>consensus
AAUUUAUCUUCAAACUUAUUC__A_AUC_GUUUUU_CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA
........................................((((....))))....((((((((((((((..((((......))))((((.....)))))))))))))))))) (-21.88 = -23.40 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:34 2006