| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,322,547 – 4,322,639 |
| Length | 92 |
| Max. P | 0.964285 |
| Location | 4,322,547 – 4,322,639 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -14.82 |
| Consensus MFE | -5.96 |
| Energy contribution | -5.16 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.29 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.964285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4322547 92 - 22224390 CUGCAAUAUUCCCUCCAUAUAUAC--------CUAUGUAUACAAUAUGUAUGUAUGUCCAUACAUAUAUUGCCCAAUCCAUUUUGAUCCGUUUCGAUCCG ..(((((((......(((((((((--------.(((.......))).))))))))).........)))))))............((((......)))).. ( -16.76) >DroSec_CAF1 108849 79 - 1 CUGCAAUAUCCCCUUCAUAUAUAC--------CUAUGUAUAU-----AUAUG--------UACAUAUAUUUCCCAAUCCAUUUUGAUCCGUAUCGAUCCG ........................--------.((((((((.-----...))--------))))))..................((((......)))).. ( -7.50) >DroSim_CAF1 102186 79 - 1 CUGCAAUAUCCCCUUCGUAUAUAC--------CUAUGUAUAU-----AUAUG--------UACAUAUAUUGCCCAAUCCAUUUUGAUCCGUUUCGAUCCG ..(((((((......((((((((.--------.......)))-----)))))--------.....)))))))............((((......)))).. ( -13.20) >DroEre_CAF1 115842 87 - 1 CUGCAAUAUCCCCUCUACAUACACAUACAUACGUAUGAAUGU-----AUGUA--------UGUAUAUAUUGCCCAAUCCAUUUUGAUCCGUUUCGAUCCG ..(((((((......(((((((((((((....)))))..)))-----)))))--------.....)))))))............((((......)))).. ( -20.00) >DroYak_CAF1 110423 80 - 1 CUGCAAUAUCCCCUCCAUAUAUACA-------GUAUGUAUGU-----AUGUA--------UAUAUAUAUUGCCCAAUCCAUUUUGAUCCGUUUCGAUCCG ..(((((((......(((((((((.-------....))))))-----)))..--------.....)))))))............((((......)))).. ( -16.62) >consensus CUGCAAUAUCCCCUCCAUAUAUAC________CUAUGUAUAU_____AUAUG________UACAUAUAUUGCCCAAUCCAUUUUGAUCCGUUUCGAUCCG ..((((((........(((((((............)))))))......((((..........))))))))))............((((......)))).. ( -5.96 = -5.16 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:20 2006