Locus 1431

Sequence ID X_DroMel_CAF1
Location 4,318,003 – 4,318,107
Length 104
Max. P 0.810845
window2281

overview

Window 1

Location 4,318,003 – 4,318,107
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 98.08
Mean single sequence MFE -20.50
Consensus MFE -19.06
Energy contribution -19.06
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.93
SVM decision value 0.65
SVM RNA-class probability 0.810845
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4318003 104 - 22224390
UUGUAACCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGACCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC
........((............(((......)))..((((((((................(((((....)))))((....))))))))))........)).... ( -19.30)
>DroSec_CAF1 104390 104 - 1
UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC
..((((.(((............))).......))))((((((((.(..((((.(.....)(((((....)))))))))..).)))))))).............. ( -20.40)
>DroSim_CAF1 97748 104 - 1
UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC
..((((.(((............))).......))))((((((((.(..((((.(.....)(((((....)))))))))..).)))))))).............. ( -20.40)
>DroEre_CAF1 111385 104 - 1
UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCCUUUGCGUUUGCCAUUUCCACCGCCUCC
..((((.(((............))).......))))((((((((.(..((((.(.....)(((((....)))))))))..).)))))))).............. ( -23.10)
>DroYak_CAF1 106113 104 - 1
UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUAUUGCGUUUGCCAUUUCCACCGCCCCC
..((((.(((............))).......))))((((((((...(((.....)))..(((((....)))))((....)))))))))).............. ( -19.30)
>consensus
UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC
........((............(((......)))..((((((((................(((((....)))))((....))))))))))........)).... (-19.06 = -19.06 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:15 2006