Locus 1430

Sequence ID X_DroMel_CAF1
Location 4,317,321 – 4,317,414
Length 93
Max. P 0.708383
window2280

overview

Window 0

Location 4,317,321 – 4,317,414
Length 93
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 80.98
Mean single sequence MFE -29.68
Consensus MFE -20.40
Energy contribution -20.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.69
SVM decision value 0.37
SVM RNA-class probability 0.708383
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4317321 93 - 22224390
-------------------CGGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA-------UGCCGCAAUCAACUGAA
-------------------(((((..((.((((.(((((....))))))))).......((((((.....(.....).....))))))...))..-------)))))............ ( -22.00)
>DroPse_CAF1 122866 111 - 1
GGAUGUUGCCUGUUGGCAGCCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA-------UGCCGCAAUCAACUUU-
.(((((((((....)))))).((((((..((((.(((((....))))))))).......((((((.....(.....).....))))))......)-------)).))).)))......- ( -32.10)
>DroGri_CAF1 122152 90 - 1
-------------------UGGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAGCGCUCGAUGACAUUAGCACCAACCAAA-------UGCCGCAUGCCGCA---
-------------------..(((((((((.((((((((....)))).)))).......((((((((........))).....))))).......-------...)))))).))).--- ( -28.80)
>DroWil_CAF1 121189 102 - 1
----------------CAGCGGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAAAUGCCGACGCCGCAAACAACCCG-
----------------..((((((...((((((((((((....)))).)))).......((((((.....(.....).....)))))).......))))...))))))..........- ( -31.10)
>DroMoj_CAF1 169420 90 - 1
-------------------GCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAGCCAAA-------UGCCGCAUGCCGCA---
-------------------(((.(((((((.((((((((....)))).)))).......((((((.....(.....).....)))))).......-------...)))))))))).--- ( -32.00)
>DroPer_CAF1 124439 111 - 1
GGAUGUUGCCUGUUGGCAGCCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA-------UGCCGCAAUCAACUUU-
.(((((((((....)))))).((((((..((((.(((((....))))))))).......((((((.....(.....).....))))))......)-------)).))).)))......- ( -32.10)
>consensus
___________________CCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA_______UGCCGCAAUCAACU___
.....................(((...((((((.(((((....))))))))).......((((((.....(.....).....))))))...............)))))........... (-20.40 = -20.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:14 2006