Locus 1429

Sequence ID X_DroMel_CAF1
Location 4,312,928 – 4,313,020
Length 92
Max. P 0.572234
window2279

overview

Window 9

Location 4,312,928 – 4,313,020
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 80.07
Mean single sequence MFE -24.08
Consensus MFE -16.57
Energy contribution -18.32
Covariance contribution 1.75
Combinations/Pair 1.13
Mean z-score -1.25
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.572234
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4312928 92 - 22224390
CAGUUACU--ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUCCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC
........--....((((((((......((......((((((...)))))).(.((((((((.....)))))))).)...)).))))))))... ( -25.60)
>DroSec_CAF1 99060 92 - 1
CAGCUACU--ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUGCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC
........--....((((((((......((......((((((...)))))).(.((((((((.....)))))))).)...)).))))))))... ( -26.30)
>DroSim_CAF1 92676 92 - 1
CAGCUACU--ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUGCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC
........--....((((((((......((......((((((...)))))).(.((((((((.....)))))))).)...)).))))))))... ( -26.30)
>DroEre_CAF1 106191 80 - 1
---------UACUACU-----GCCACAUGCAUUAUACCAGAUACCACUUGGACUGGGGCGAUGUGAUGUUGCCCCCGAAAGCUUGUUACAGGAC
---------.....((-----(..(((.((......((((.......)))).(.((((((((.....)))))))).)...)).)))..)))... ( -23.90)
>DroYak_CAF1 101048 94 - 1
CAGCUACUAUACCACUGUAAUACCACAUGCAGUAUACCAGAUAGCAUUUGGACUGGGGCGAUGUGAUGUUGCCCCCGAAAGCUUGUUACAGGAC
..............(((((((((((.((((.((.......)).)))).))).(.((((((((.....)))))))).)......))))))))... ( -29.00)
>DroAna_CAF1 118672 77 - 1
UUGCCACU--GCCACUG-----CCACU-G------CCAAGCUGCAACCUGGAGAGGAGAGUU---ACAUUGCCCUCGAAAGCUUGUUACAGGAC
...((.((--.((.((.-----(((.(-(------(......)))...))))).)))).((.---(((..((........)).))).)).)).. ( -13.40)
>consensus
CAGCUACU__ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUGCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC
..............(((((.....(((.((......(((((.....)))))...((((((((.....)))))))).....)).))))))))... (-16.57 = -18.32 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:13 2006