| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,306,834 – 4,306,925 |
| Length | 91 |
| Max. P | 0.513140 |
| Location | 4,306,834 – 4,306,925 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -10.72 |
| Energy contribution | -12.25 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.41 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4306834 91 + 22224390 CGCCUUAAUGACCGGCUUCAUUUAUUGAUGACGAUUAUAAAGCAAUUUGUGCAAGUCAACAAUUC-C--UGACCCACUG----GCC-----------GAGG-UGGUUUGA (((((.......((((((((...((((.((((...((((((....))))))...)))).))))..-.--)))......)----)))-----------))))-))...... ( -23.41) >DroPse_CAF1 111872 92 + 1 CGCC-UAAUGACUGGCUUCAUUUAUUGAUGACGAUUAUAAAGCAAUUUGUGCAAGUCAACAAUAUUC--UGACCCACUG----GAU-----------GCCGGUGGUGCCG ....-........(((.(((..(((((.((((...((((((....))))))...)))).)))))...--))).((((((----(..-----------.))))))).))). ( -27.90) >DroEre_CAF1 100195 90 + 1 CGGC-UAAUGACCGGCUUCAUUUAUUGAUGACGAUUAUAAAGCAAUUUGUGCAAGUCAACAAUUC-C--UGACCCACUG----GCC-----------GAGG-UGGUUUGA ((((-((.((...((..(((...((((.((((...((((((....))))))...)))).))))..-.--))))))).))----)))-----------)...-........ ( -22.60) >DroWil_CAF1 110833 106 + 1 UGCCUUAAUGACUGGCUUCAUUUAUUGAUGACGAUUAUAAAGCAAUUUGUACAAGUCAACAACUA-U--UGACCCACCCAUUCGAUGAGUUCGGUGGGUGG-CGGUGCUC .(((.........))).(((.(..(((.((((...((((((....))))))...)))).)))..)-.--)))(((((((((.(((.....)))))))))))-.)...... ( -31.80) >DroAna_CAF1 111982 97 + 1 UGCC-UAAUGACCGGCUUCAUUUAUUGAUGACGAUUAUAAAGCAAUUUGUGCAAGUCAACAAUUC-CAGUGACCCACUG----GGU----AC--UGGGUAG-UGGGUCUA ....-....((((.(((.(....((((.((((...((((((....))))))...)))).)))).(-(((((.(((...)----)))----))--)))).))-).)))).. ( -32.50) >DroPer_CAF1 113338 91 + 1 CGCC-UAAUGACUGGCUUCAUUUAUUGAUGACGAUUAUAAAGCAAUUUGUGCAAGUCAACAAUAU-C--UGACCCNNNN----NNN-----------NNNNNNNNNNNNN .(((-........))).(((..(((((.((((...((((((....))))))...)))).))))).-.--))).......----...-----------............. ( -19.50) >consensus CGCC_UAAUGACCGGCUUCAUUUAUUGAUGACGAUUAUAAAGCAAUUUGUGCAAGUCAACAAUUC_C__UGACCCACUG____GAU___________GAGG_UGGUUCGA .............((..(((...((((.((((...((((((....))))))...)))).))))......))).))................................... (-10.72 = -12.25 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:11 2006