Locus 1426

Sequence ID X_DroMel_CAF1
Location 4,303,374 – 4,303,482
Length 108
Max. P 0.770511
window2276

overview

Window 6

Location 4,303,374 – 4,303,482
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 95.78
Mean single sequence MFE -17.36
Consensus MFE -16.56
Energy contribution -16.60
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.19
Structure conservation index 0.95
SVM decision value 0.53
SVM RNA-class probability 0.770511
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4303374 108 - 22224390
AAAUGUGAAUCUACAGCUCAGCGCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA---CACGCA
...((((..(((...((((......((((((....))))))...........(....)..))))..................((....)).........)))---..)))) ( -18.60)
>DroSec_CAF1 89758 109 - 1
AAAUGUGAAUCUACAGCUUU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGACAACACGCA
....(((..(((...(((((--(((((((((....))))))...........(((((...........))))).........))))).....)))....)))...)))... ( -17.20)
>DroSim_CAF1 83298 109 - 1
AAAUGUGAAUCUACAGCUCU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGACAACACGCA
....(((..(((...((((.--...((((((....))))))...........(....)..))))..................((....)).........)))...)))... ( -17.20)
>DroEre_CAF1 96758 106 - 1
AAAUGUGAAUCUACAGCUCU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA---CACGCA
...((((..(((...((((.--...((((((....))))))...........(....)..))))..................((....)).........)))---..)))) ( -18.10)
>DroYak_CAF1 91521 106 - 1
AGAUGUAAAUCUACAGCUCU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA---CACGCA
((((....))))...((...--...((((((....))))))........((.(((((...........))))).........((....))..))........---...)). ( -15.70)
>consensus
AAAUGUGAAUCUACAGCUCU__CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA___CACGCA
....(((..(((...((((......((((((....))))))...........(....)..))))..................((....)).........)))...)))... (-16.56 = -16.60 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:10 2006