Locus 1422

Sequence ID X_DroMel_CAF1
Location 4,294,815 – 4,294,906
Length 91
Max. P 0.903910
window2267

overview

Window 7

Location 4,294,815 – 4,294,906
Length 91
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 85.71
Mean single sequence MFE -22.51
Consensus MFE -18.68
Energy contribution -18.72
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.93
Structure conservation index 0.83
SVM decision value 1.03
SVM RNA-class probability 0.903910
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4294815 91 + 22224390
UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUCUGCACUGC-AAAAAAAUAUAUAUAUG--UACAU-AGAU--A-----CU
...(((((((((((.(((((((...))))))).....)))))...)))))).((((...(((-(..............))--))..)-))).--.-----.. ( -20.44)
>DroSec_CAF1 81408 90 + 1
UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUGGGCACUGC-AAAAAAAAA-AUACAUA--UAUGU-AGAU--A-----CU
...(((((((((((.(((((((...))))))).....)))))...)))))).......((((-(........-.......--..)))-))..--.-----.. ( -21.83)
>DroSim_CAF1 74954 91 + 1
UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUGGGCACUGC-AAAAAAAAAUAUACAUA--UAUGU-AGAU--A-----CU
...(((((((((((.(((((((...))))))).....)))))...)))))).......((((-(................--..)))-))..--.-----.. ( -21.77)
>DroEre_CAF1 88227 96 + 1
UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGCCCCAACCUCAACCUAAAUCUUUGGCACUGAGAAAAAAGAA-GUACACACGUAUUUUGGAUGCA-----CU
..((((((.((.((.(((((((...)))))))))))..((((..((((....))))...))))......(((-((((....))))))))))).))-----.. ( -23.40)
>DroYak_CAF1 82544 100 + 1
UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUUGGCACUGC-AAAAAACAA-AUAUAUAUAUAUUUUGGAAACAAAGUUCU
...(((((((((((.(((((((...))))))).....)))))...))))))((((......)-)))......-..........((((((....))))))... ( -25.10)
>consensus
UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUGGGCACUGC_AAAAAAAAA_AUACAUA__UAUGU_AGAU__A_____CU
...(((((((((((.(((((((...))))))).....)))))...))))))................................................... (-18.68 = -18.72 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:02 2006