| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,281,383 – 4,281,478 |
| Length | 95 |
| Max. P | 0.896180 |
| Location | 4,281,383 – 4,281,478 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.37 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -19.11 |
| Energy contribution | -19.68 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4281383 95 - 22224390 AAUGCUAAAAGCCAAGCCGGGUUCGCCUCGAACGCGUGAAUUUGCCACGAGGACAAAGGCUUACCGAACAGGGUACAAAAAAAAAAAAUGGUAAC ..(((((.(((((....((.(((((...))))).))....((((((....)).)))))))))(((......)))..............))))).. ( -23.30) >DroSec_CAF1 67699 90 - 1 AAUGCUAAAAGCCAAGCCGGGUUCGCCUCGAACGCGUGAAUUUGCCACGAGGAUAAAGGCUUACCGAAAAGGGUA-----AAAAAAAAUAAUAAC ...((.....))...(((.......(((((...(((......)))..))))).....)))(((((......))))-----).............. ( -19.60) >DroSim_CAF1 62245 89 - 1 AAUGCUAAAAGCCAAGCCGGGUUCGCCUCGAACGCGUGAAUUUGCCACGAGGACAAAGGCUUACCGAAAAGGGUA-----AAA-AAAAUAGUAAC ..(((((...(((....((.(((((...))))).))....((((((....)).)))))))(((((......))))-----)..-....))))).. ( -23.70) >DroYak_CAF1 69499 88 - 1 AAUGCUAAAAGCCAAGCCGGAUUCGCCUCGAACGCGUGAAUUUGCCACGAGGACAAAUGCAUACCGAAAAGGGUAA-----A--AAAAUAGUAAC ..(((((...........(.(((.((((((...(((......)))..))))).).))).).((((......)))).-----.--....))))).. ( -19.00) >consensus AAUGCUAAAAGCCAAGCCGGGUUCGCCUCGAACGCGUGAAUUUGCCACGAGGACAAAGGCUUACCGAAAAGGGUA_____AAA_AAAAUAGUAAC ..(((((......(((((.......(((((...(((......)))..))))).....)))))(((......)))..............))))).. (-19.11 = -19.68 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:57 2006