Locus 1417

Sequence ID X_DroMel_CAF1
Location 4,274,372 – 4,274,470
Length 98
Max. P 0.578472
window2258

overview

Window 8

Location 4,274,372 – 4,274,470
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.69
Mean single sequence MFE -36.32
Consensus MFE -17.65
Energy contribution -17.65
Covariance contribution 0.00
Combinations/Pair 1.21
Mean z-score -2.36
Structure conservation index 0.49
SVM decision value 0.09
SVM RNA-class probability 0.578472
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4274372 98 + 22224390
---ACAACAGCACCCGGCCCCACCACCACCACCGUACUUUCCAGCUGCGGCACUGGCCGCUCUAGCUGGAAGUCCGGCCGGACCGCAUCCGGGUCUGUAUC
---...((((.((((((........((....(((.((((.(((((((((((....)))))...)))))))))).)))..)).......))))))))))... ( -42.86)
>DroPse_CAF1 74314 98 + 1
ACCGCAACAGCA---GCCGCCACCACCGCCGCCGUACUUUCCCGCCGCCGCUUUGGCCGCUCUGGCCGGUAGUCCAGCCGGACCACAUCCAGGGCUGUAUU
.........(((---(((((..(((..((.((.((........)).)).))..)))..)).((((...((.((((....)))).))..))))))))))... ( -34.00)
>DroSec_CAF1 60852 98 + 1
---GCAACAGCACCCGGCCCCACCACCACCACCGUACUUUCCAGCUGCGGCACUGGCCGCUCUAGCUGGAAGUCCGGCCGGACCACAUCCGGGUCUGUAUC
---...((((.((((((........((....(((.((((.(((((((((((....)))))...)))))))))).)))..)).......))))))))))... ( -42.86)
>DroWil_CAF1 73475 90 + 1
-----AACAA------CAGCCACCACCUCCACCGUAUUUUCCCGCCGCUGCAUUGGCCGCAUUGGCUGGCAGUCCGGCUGGACCACAUCCUGGUCUAUAUC
-----.....------(((((...........((........))..(((((...((((.....)))).)))))..)))))(((((.....)))))...... ( -26.40)
>DroYak_CAF1 62481 96 + 1
-----AACAGCACCCGGCACCACCACCACCCCCGUACUUUCCAGCUGCGGCACUGGCCGCCCUAGCUGGCAGUCCGGCCGGACCGCAUCCGGGCCUGUAUC
-----.((((..(((((........................((((((((((....)))))...)))))((.((((....)))).))..))))).))))... ( -37.80)
>DroPer_CAF1 75559 98 + 1
ACCGCAACAGCA---GCCGCCACCACCGCCGCCGUACUUUCCCGCCGCCGCUUUGGCCGCUCUGGCCGGUAGUCCAGCCGGACCACAUCCAGGGCUGUAUU
.........(((---(((((..(((..((.((.((........)).)).))..)))..)).((((...((.((((....)))).))..))))))))))... ( -34.00)
>consensus
___GCAACAGCA___GCCGCCACCACCACCACCGUACUUUCCAGCCGCGGCACUGGCCGCUCUAGCUGGAAGUCCGGCCGGACCACAUCCGGGUCUGUAUC
......((((.....................(((.(((..((.((((.(((.......))).)))).)).))).)))(((((.....))).)).))))... (-17.65 = -17.65 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:55 2006