Locus 1414

Sequence ID X_DroMel_CAF1
Location 4,262,913 – 4,263,005
Length 92
Max. P 0.500000
window2254

overview

Window 4

Location 4,262,913 – 4,263,005
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 88.03
Mean single sequence MFE -33.25
Consensus MFE -24.95
Energy contribution -26.07
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -2.62
Structure conservation index 0.75
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4262913 92 + 22224390
ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-AUUUGGUCAGAAUCAUUUAGCUGAUUGGUCAGAGCA--AUGAUAAGAAAUCGGG
......(((((((((....((((((((....)))))))).-...........((((((...((((....))))...)--)))))..))))))))) ( -31.10)
>DroPse_CAF1 59924 91 + 1
ACAACGCUCGAUUUCAUUUGAUGUGCCCGCUGGCGCGUCCCCUUUGGUCAGACUCAUUUAGUUGAUUGGUCAGAGGGUAGUGGC----AGACGGG
....(((((((......)))).)))(((((((.(((...(((((((..(((..(((......))))))..)))))))..))).)----)).)))) ( -37.60)
>DroSim_CAF1 45280 92 + 1
ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-AUUUGGUCAGAAUCAUUUAGCUGAUUGGUCAGAGGA--AUGGUAAGAAAUCGGG
......(((((((((....((((((((....)))))))).-...........(((((((..((((....))))..))--)))))..))))))))) ( -33.70)
>DroEre_CAF1 56706 92 + 1
GCAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-GUUUGGUCAGAUUCAUUUAGCUGAUUGGUCAGUGGA--UUGGCAAGAAAUCGUG
........(((((((....((((((((....)))))))).-.....(((((.((((((.(.(.....).).))))))--)))))..))))))).. ( -28.50)
>DroYak_CAF1 50687 92 + 1
ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-AUUUGGUCAGAUUCAUUUAGCUGAUUGGUCAGAGGA--AUGGUCAGAAAUCGCG
....(((..((((((....((((((((....)))))))).-.........(((.(((((..((((....))))..))--)))))).))))))))) ( -31.00)
>DroPer_CAF1 61064 91 + 1
ACAACGCUCGAUUUCAUUUGAUGUGCCCGCUGGCGCGUCCCCUUUGGUCAGACUCAUUUAGUUGAUUGGUCAGAGGGUAGUGGC----AGUCGGG
....(((((((......)))).)))(((((((.(((...(((((((..(((..(((......))))))..)))))))..))).)----)).)))) ( -37.60)
>consensus
ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC_AUUUGGUCAGAAUCAUUUAGCUGAUUGGUCAGAGGA__AUGGCAAGAAAUCGGG
......(((((((((....((((((((....))))))))...((((..(((..(((......))))))..))))............))))))))) (-24.95 = -26.07 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:51 2006