Locus 1413

Sequence ID X_DroMel_CAF1
Location 4,255,213 – 4,255,314
Length 101
Max. P 0.590169
window2253

overview

Window 3

Location 4,255,213 – 4,255,314
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 91.30
Mean single sequence MFE -17.97
Consensus MFE -17.33
Energy contribution -17.67
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.31
Structure conservation index 0.96
SVM decision value 0.11
SVM RNA-class probability 0.590169
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4255213 101 + 22224390
AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUGUCUAGUGUUUGACAACAACAGCAACAGCAAACAGCAACAAAGG
......(((((..(((..........)))..)))))................((((((((........))))))))..((....))............... ( -20.30)
>DroSim_CAF1 36183 94 + 1
AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUGUCUAGUGUUUGACAACAACAGCAA-------CAGCAACAAAGG
......(((((..(((..........)))..)))))................((((((((........))))))))..((..-------..))........ ( -20.30)
>DroYak_CAF1 43042 94 + 1
AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUUUCUAGUGUUUGACAACAACAG------CA-ACAACAACAAAAG
......(((((..(((..........)))..)))))................(((((..((..((((....))))..))------.)-))))......... ( -13.30)
>consensus
AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUGUCUAGUGUUUGACAACAACAGCAA___CA_ACAGCAACAAAGG
......(((((..(((..........)))..)))))................((((((((........))))))))......................... (-17.33 = -17.67 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:50 2006