| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,249,609 – 4,249,700 |
| Length | 91 |
| Max. P | 0.627184 |
| Location | 4,249,609 – 4,249,700 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -25.71 |
| Consensus MFE | -19.04 |
| Energy contribution | -18.88 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4249609 91 + 22224390 UAGG-AGG--------CGGUGACUGGCGGGGGGUGAA--GAUGGAAGCAAACUACGAAACAAUGAGGCGACUGAGUGCCAUAAAAACUCUGUCGCCGAAGCC ....-.((--------((....)((.((..(..((..--........))..)..))...))....((((((.((((.........)))).))))))...))) ( -26.00) >DroSec_CAF1 36982 91 + 1 UAGG-AGG--------UGGUGACUGGCGGGGGGUGAA--GAUGGAAACAAACUACGAAACAAUGAGGCGACUGAGUGCCAUAAAAACUCUGUCGCCGAAGCC ....-...--------.(....).(((..(..((...--..((....)).))..)..........((((((.((((.........)))).))))))...))) ( -25.00) >DroEre_CAF1 42078 83 + 1 UAGG------------UGGUGGCU-----GGGGUGAA--GAUGGAAGCAAACUACGAAACAAUGAGGCGACUGAGUGCCAUAAAAACUCUGUCGCCGAGGCC ...(------------((((.(((-----........--......)))..)))))..........((((((.((((.........)))).))))))...... ( -23.64) >DroYak_CAF1 36879 93 + 1 UAAGAAGGCGGUGA--CGGUGACU-----GGGGUGAA--GAUGGAAACAAACUACGAAACAAUGAGGCGACUGAGUGCCAUAAAAACUCUGUCGCCGAAGCC ......((((....--)((((((.-----(((((...--..((....))................((((......))))......)))))))))))...))) ( -28.60) >DroAna_CAF1 43701 95 + 1 -GAG-AGGCAGUGAGGCAAGAGGA-----GGGGUGAGGUGGUGGCAACAAACUACAAAACAAUGAGGCGACUGAGUGCCAUAAAAACUCUGUCGCCAGAGUC -...-.........(((.......-----...((...((((((....)..)))))...)).....((((((.((((.........)))).))))))...))) ( -25.30) >consensus UAGG_AGG________CGGUGACU_____GGGGUGAA__GAUGGAAACAAACUACGAAACAAUGAGGCGACUGAGUGCCAUAAAAACUCUGUCGCCGAAGCC ...............................(((.......((....))................((((((.((((.........)))).))))))...))) (-19.04 = -18.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:48 2006