Locus 1410

Sequence ID X_DroMel_CAF1
Location 4,240,274 – 4,240,381
Length 107
Max. P 0.799520
window2250

overview

Window 0

Location 4,240,274 – 4,240,381
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 91.26
Mean single sequence MFE -25.59
Consensus MFE -20.24
Energy contribution -20.05
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.97
Structure conservation index 0.79
SVM decision value 0.61
SVM RNA-class probability 0.799520
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4240274 107 - 22224390
AACUCACAUGUCGCCUUAUUAGCAAACCCAUGGCCAACUCAUUGAGUGGAUUCCUUCAGCUUCUGGUUUUUCUCUUGCUGUCUGUUUUUGCCAUUCACUUGCUGGCA
......((((..((.......)).....))))((((.(....(((((((.......((((....((....))....))))..........)))))))...).)))). ( -21.43)
>DroSec_CAF1 27324 103 - 1
AACUCACAUGUCGCCUUAUUAGCAAACCCAUGGCCAACUCAUUGAGUGGAUUCCUCCAGCUUCUGGUUUUUCUUUAGCG----UUUUUUGCCAUUCACUUGCUGGCA
............(((.....(((((....(((((..((((...))))(((....))).(((...((.....))..))).----......)))))....)))))))). ( -21.40)
>DroEre_CAF1 32933 102 - 1
AACUCACAUGUCGCCUUAUUAGCAA-CCCAGGGCCAACUCAUUGAGUGGAUUUCUCCAGCUUCUGGUUUUCCUUUUGCU----GCUUUAGCCAUUCACUUGCUGGCA
............(((.....(((((-....(((....)))..(((((((.......((((....((....))....)))----)......))))))).)))))))). ( -25.02)
>DroYak_CAF1 27216 102 - 1
AACUCACAUGUCGCCUUAUUAGCAA-GCCAUGGCCAACUCAUUGAGUGGAUUCCGCCAGCUUCUGGUUUUCCUUUUGCU----GUUUUGGCCAUUCACUUGCUGGCA
............(((.....(((((-(..((((((((..((..(((.(((....(((((...)))))..))).)))..)----)..))))))))...))))))))). ( -34.50)
>consensus
AACUCACAUGUCGCCUUAUUAGCAA_CCCAUGGCCAACUCAUUGAGUGGAUUCCUCCAGCUUCUGGUUUUCCUUUUGCU____GUUUUUGCCAUUCACUUGCUGGCA
............(((.....(((((....(((((..((((...))))(((.....((((...))))...))).................)))))....)))))))). (-20.24 = -20.05 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:47 2006