| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,239,671 – 4,239,768 |
| Length | 97 |
| Max. P | 0.985809 |
| Location | 4,239,671 – 4,239,768 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 72.44 |
| Mean single sequence MFE | -12.88 |
| Consensus MFE | -11.34 |
| Energy contribution | -11.74 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.88 |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.985809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4239671 97 + 22224390 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCU------CCUAAACCCCCAACACCCCUUUAAACACCCCUUUGCCGCAGC ..((((((((((...--.)))((((((....)))))).....)))))))........------.......................................... ( -12.40) >DroSec_CAF1 26737 87 + 1 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCU------CCUAAAACCCCUAC----------ACACCCCUUUGCCCCAGC ..((((((((((...--.)))((((((....)))))).....)))))))........------..............----------.................. ( -12.40) >DroEre_CAF1 32335 89 + 1 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCCUUGGCCCCUACACU-CCUACACUCCU----ACACCCCCU--------- ..((((((((((...--.)))((((((....)))))).....)))))))...(((....))).........-...........----.........--------- ( -15.30) >DroYak_CAF1 26608 77 + 1 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCACC------------CC-CCAACCCUCCA----ACGUACCCC--------- ..((((((((((...--.)))((((((....)))))).....)))))))........------------..-...........----.........--------- ( -12.40) >DroAna_CAF1 31051 78 + 1 ACGGUUCUUGAGAUGAGCGUCGAUUUCCGCGGAAAUUGCUAAUAGAAUCACAGCCCC------UC----CCCCCCACAGUCC---------CCCAU--------A ..((((((.......(((...((((((....)))))))))...))))))........------..----.............---------.....--------. ( -11.90) >consensus ACGGUUCUAGAGAUG__CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCC______CCUA_ACCCCCAACACUCC_____ACACCCCCU_________ ..((((((((((......)))((((((....)))))).....)))))))........................................................ (-11.34 = -11.74 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:46 2006